Basic Information

Insect: Hyphantria cunea
Gene Symbol: -
Assembly: GCA_003709505.1
Location: PKRV01000955.1:72069-84465[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6e-07 3.8e-05 24.0 1.6 1 23 197 219 197 219 0.98

2 15 1e-06 6.4e-05 23.2 5.0 1 23 224 246 224 246 0.99

3 15 1.7e-05 0.0011 19.4 5.0 1 23 252 274 252 274 0.97

4 15 9.6e-06 0.0006 20.2 3.7 1 23 280 302 280 302 0.98

5 15 1.4e-06 9e-05 22.8 3.3 1 23 308 330 308 330 0.98

6 15 5.1e-06 0.00032 21.1 4.3 1 23 336 358 336 358 0.98

7 15 0.0036 0.22 12.1 6.2 1 23 364 386 364 386 0.91

8 15 5.3e-06 0.00033 21.0 3.1 1 23 392 414 392 414 0.98

9 15 6.8e-07 4.2e-05 23.8 2.7 1 23 420 442 420 442 0.99

10 15 4.7e-06 0.00029 21.2 0.8 1 23 448 470 448 470 0.98

11 15 1.6e-06 0.0001 22.6 2.0 1 23 476 498 476 498 0.99

12 15 7.6e-07 4.7e-05 23.6 3.1 1 23 504 526 504 526 0.99

13 15 7.4e-06 0.00046 20.5 2.5 1 23 532 554 532 554 0.99

14 15 9.2e-05 0.0057 17.1 0.4 1 23 560 582 560 582 0.98

15 15 9.8e-07 6.1e-05 23.3 0.1 1 20 588 607 588 609 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6e-07	3.8e-05	24.0	1.6	1	23	197	219	197	219	0.98
2	15	1e-06	6.4e-05	23.2	5.0	1	23	224	246	224	246	0.99
3	15	1.7e-05	0.0011	19.4	5.0	1	23	252	274	252	274	0.97
4	15	9.6e-06	0.0006	20.2	3.7	1	23	280	302	280	302	0.98
5	15	1.4e-06	9e-05	22.8	3.3	1	23	308	330	308	330	0.98
6	15	5.1e-06	0.00032	21.1	4.3	1	23	336	358	336	358	0.98
7	15	0.0036	0.22	12.1	6.2	1	23	364	386	364	386	0.91
8	15	5.3e-06	0.00033	21.0	3.1	1	23	392	414	392	414	0.98
9	15	6.8e-07	4.2e-05	23.8	2.7	1	23	420	442	420	442	0.99
10	15	4.7e-06	0.00029	21.2	0.8	1	23	448	470	448	470	0.98
11	15	1.6e-06	0.0001	22.6	2.0	1	23	476	498	476	498	0.99
12	15	7.6e-07	4.7e-05	23.6	3.1	1	23	504	526	504	526	0.99
13	15	7.4e-06	0.00046	20.5	2.5	1	23	532	554	532	554	0.99
14	15	9.2e-05	0.0057	17.1	0.4	1	23	560	582	560	582	0.98
15	15	9.8e-07	6.1e-05	23.3	0.1	1	20	588	607	588	609	0.95

Sequence Information

Coding Sequence: ATGGAGAAGCCGGCTATGTGCAGGCTTTGTCTCGCTCAGGACGTTCGAATGCATTTCATAGTTGACACGAACCTTCAAGAAACGTATGAGAAACTCACAGATGTTCCActACATACCAAAGACAACAAACCATCGCTGGCCTGTTATATGTGTTTCACCAAGCTTCGGAACTGCTACCAATTTAGAATCGACTGTCTTAGGAGCGAAGAGTTTCTTACGGAAATGATAAACAGCGATGTGTTCCATCAATTCAGACCCCAAGACATTCCCGTGGCAAAGAAACTTGAAGTCACCCCTGTGAGACACATATCTACAATTAATATGGCGGACCTAAACTCTGAAACCGCTATAGAAATCAAGTTGGAAGTAGTTGAATgtGAACCAGAAATTGTGGCACCAGAACCAACCCTCGAAAACACCCCGACCCTGCCATTTGCGCACGTCGAAATAAAGGAGGAAATCGTTGAAACTTGCGACAACATTTCGATTCATATCAATGAAGACGATAATTCTGAACAAAGCATTATCGAAAACGGCTGTCCCGATAGGGATGAATCTAACGTCAACGCTAACACAAGTAAAAGCACATTTAAGTGTCacatttgtgataaaaacttCACTAATGTTGATAATTTAGATGTTCATATTCGCCAACATGGAGACAAACCGTACAAATGCAGTTTCTGTCACAAAGGATTTACCAGAAAGAATAATTTGAACAGTCATCTGCGGGTCCACAGCGGTGTAATATCACACAGGTGTCAAATTTGTGAGAAATGCTTCAGTGACCAAAGGGATTTGAATAAGCATGCTAAACTCCACACAGGGGAAAAACCACACAAATGCTATATATGTAAGAAAGGGTTCTCACAAAAGAGTTATTTAGACAGCCACATTCAAACGCATATACGCGAGAAATCGCATAAGTGTGAGGTCTGCGAGAAATGTTTCTTTCAACCGAGCGAATTGAAAAGACACATTTTGGTACACACCGGGGAACGACCGTTCAAATGTGATTCCTGCGACAAATGTTTTAGAAGGGTCGGTGATTTAAAAAGACACTATCGTTTACACACCGGAGATAAGCCATATCCATGTCATTTGTGTCCCAAAAGGTTCTATCAAAAGAGTCATTTAGATATGCATTGTTTAATGCACACAGGGGAGAAACCATTCAAATGTGATTTATGCGAGAGGTGTTTCAATCAAACTGGGGATTTGAAGAAGCACATTAGACTACACACCGGTGAAAAACCTTATAAGTGTAATTTTTGTGACAAGTCTTTCAGTAGCAATAGTAACTATGTGATACACAATCGTACACACACTGGTGAAAAACCATACAACTGTACTGTGTGCGAGAAACGGTTCATAACTAAGTCTGATTTGGTCAATCACAACCGTGTACACACTGATGAGAGACCTTATAAATGTAACATGTGTGAAAAGGGCTTTAAAATTAGTGGCCATCTTGTCAAGCATATCCGTACACACACAGGTGAAAAACCATATACATGTGacacatgtaaaaaaagttttggtaACAAATACCATTTGATTACTCACATTCGTATCCACACAGGGGATTCCCCATACCAGTGccatatttgtaataaaaagttaaatgataaaaataatctggACATTCATATTAGAAAACATTTGGGCATTAAGCCCTTCCAGTGTAGCGTTTGTGAGAAAGCGTTCTTTATAAACAGTGATTTGGTGAAACATAACCGAGTGCACACGGGTGAAAAACCGTTTAAATGTGAGAATTGTGGGAAAGTGTTTGCAGAGAAgagcaatttaaataaacatgttctaggaagagtttgtttgaaataa
Protein Sequence: MEKPAMCRLCLAQDVRMHFIVDTNLQETYEKLTDVPLHTKDNKPSLACYMCFTKLRNCYQFRIDCLRSEEFLTEMINSDVFHQFRPQDIPVAKKLEVTPVRHISTINMADLNSETAIEIKLEVVECEPEIVAPEPTLENTPTLPFAHVEIKEEIVETCDNISIHINEDDNSEQSIIENGCPDRDESNVNANTSKSTFKCHICDKNFTNVDNLDVHIRQHGDKPYKCSFCHKGFTRKNNLNSHLRVHSGVISHRCQICEKCFSDQRDLNKHAKLHTGEKPHKCYICKKGFSQKSYLDSHIQTHIREKSHKCEVCEKCFFQPSELKRHILVHTGERPFKCDSCDKCFRRVGDLKRHYRLHTGDKPYPCHLCPKRFYQKSHLDMHCLMHTGEKPFKCDLCERCFNQTGDLKKHIRLHTGEKPYKCNFCDKSFSSNSNYVIHNRTHTGEKPYNCTVCEKRFITKSDLVNHNRVHTDERPYKCNMCEKGFKISGHLVKHIRTHTGEKPYTCDTCKKSFGNKYHLITHIRIHTGDSPYQCHICNKKLNDKNNLDIHIRKHLGIKPFQCSVCEKAFFINSDLVKHNRVHTGEKPFKCENCGKVFAEKSNLNKHVLGRVCLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01360907;
90% Identity: -
80% Identity: -