Basic Information

Insect: Hypercompe scribonia
Gene Symbol: -
Assembly: GCA_949316085.1
Location: OX438979.1:19281399-19290022[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0005 0.053 15.0 0.2 1 23 363 385 363 385 0.98

2 10 0.29 31 6.3 0.2 2 23 393 415 392 415 0.93

3 10 0.00085 0.091 14.3 0.6 1 23 419 441 419 441 0.97

4 10 0.059 6.3 8.5 0.4 1 23 446 468 446 468 0.98

5 10 0.68 72 5.2 0.1 1 22 507 528 507 532 0.92

6 10 0.0012 0.12 13.9 0.3 2 23 551 573 551 573 0.95

7 10 0.0013 0.14 13.7 2.2 3 23 627 647 626 647 0.97

8 10 0.00081 0.086 14.4 0.1 2 23 653 674 652 674 0.97

9 10 1.2e-05 0.0013 20.1 2.8 1 23 680 702 680 702 0.98

10 10 8e-06 0.00085 20.7 1.4 1 23 708 731 708 731 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0005	0.053	15.0	0.2	1	23	363	385	363	385	0.98
2	10	0.29	31	6.3	0.2	2	23	393	415	392	415	0.93
3	10	0.00085	0.091	14.3	0.6	1	23	419	441	419	441	0.97
4	10	0.059	6.3	8.5	0.4	1	23	446	468	446	468	0.98
5	10	0.68	72	5.2	0.1	1	22	507	528	507	532	0.92
6	10	0.0012	0.12	13.9	0.3	2	23	551	573	551	573	0.95
7	10	0.0013	0.14	13.7	2.2	3	23	627	647	626	647	0.97
8	10	0.00081	0.086	14.4	0.1	2	23	653	674	652	674	0.97
9	10	1.2e-05	0.0013	20.1	2.8	1	23	680	702	680	702	0.98
10	10	8e-06	0.00085	20.7	1.4	1	23	708	731	708	731	0.98

Sequence Information

Coding Sequence: ATGGTGTCGTATTGTTGTGTGAAAGGTTGTAGTAACAATAGCaatcaaaaaaagaaagatcTCAATAGTTTAATCTCATTCCATGCCTTTCCATGCAACCAAGAGCTCAAAACAAAATGGTTAAAAGCCATCGGACGTCCAAATTGGGTGCCTCCAAGTCATGCCCGTATTTGTAGCGCCCATTTCAACCGCGATCAGATCAATTATGAAGGATGCCGAATAAGAATTATAGATGATGCTATACCCGTAAATAATTTACCTGTAAATTCCAATTTTGAAGCAACAAATGTAGAAGCATGCAGAATTTGCCTAGCAACAGATTTGAAGTTATACAGCTTAGGAGACAATAAGTTAAGCAGCTGTCTAGACACTGTCATCAGATTCAATgaAAACTGTAACATAGAAGGCCTACCGCAGTATGTTTGCTACCAATGTGCGGCctgtttgataaaatataatagactTGTAGAGAAAAGTATGATAGCCCAAGCAACACTATTAGATATATTTGCAGAAAATGGTCAGATATCCAAAAGTCTTATAAACCAGCAAAATAGaaatgttctaaatttaaactcTACACTAAATTACTGCACAATCAAAGACTACTATTATTACAATCATGATGGTGAAACgaaaagtttacaaaaattgTCTCTGGATTGTACTGGTACTCATTTAAAAGACGAAAATAATGAGCAATCTGGCTTTGAGTCTGACACAGAGAATGAAACAAAAGCTTGTAAAATAGAGATAAAAGAACACATGATAAATGAAGAAGTAAAAACCTTAGAGGACAGTCATTTGGATTCATGTTTGAACAGTCCAATCAATCCTATATCTGATGATGAAAATTACGAAATTGAGCAGAACACTATCGAAACAAATGAAGTCTTGGAAAGGGGGAGAGCTAAATCTGAAGACAGACCAATTGggaaaaaagttaaaagaaaaaaagttgatGGTCTAACGCCGGACGAAACAGACATGCAGACATATTTCGATGTGGTGAAACTATCATTACAGGAACAGATAGAAGAATGGAAAAGAACAGTTGCAAAAAGGCCTCTGACGAGTGAAACTGTGTATGAATGTGAGGTGTGCACCAAAATATTCGCTCAAGTTAATAGTTACCGCATCCACATCACCAGTCACGATGCAGCCCGAGGCAAGGTCGAATGTCAAGTATGTAAACTGCGCTTTAAAAACGATGTCCTTGCAAAATCGCACGCTAATCGAGCACATGCCAAGAAGTTCTACTGCAAAACATGTCCGAAAGTATTCAATAATGTGGGGGTAGCTAAGAAGCACCAGCGGTGGCACGCCGGCTACAGGTACTCGTGCGGCCGGTGCTCGTTCAGCTCGGCGCACGAGTCGGCGCTGGGCGCGCACGCGCGGCGCCACGCGCGCGCGCACACGTGCGCCGCCTGCGCGCGCGCCTGCCTCAGCCGCCGCGGCCTGCGCCTGCACGTGGCCGCGGCGCACCCACACCTCCAGATTTCAGATGTCACGAAAGCGTATCGATGCGAAGCATGCGATATCAACTTCATGACGGAAGGAGCCCGGCGAATACATTTACTGACCTCAAGCCAACACAGCAAAAAATCCAAtctatgtGATCCTTCAACCCAGTCATCGGAGCTCCGCAATACATGCAGTAAGTGTGGTATTGAATTTTCGTCGTTCAATGAATTAGTGTCACACACCAGGGCCGAACACCCGCGTATCAACAGGAAAAAATGGCGGGCACATGACAGTTATCCTACGCAATGTGAACTTTGTAGTGAAACTGTAACATGCCGACAAAAGCACTGGCAGCACGTGCGTAGACAACATCCGAAGAAGATTGATACCTACCGTCCTATCGTCACAGCCATATGTGATACTTGTGGGAAAGGGTTCCAGAATTCAACTAAACTCCATTTACATCAACTACGTCATCGTGCGCCTACTGTTCGATGCGACACGTGTCCTCGACTATTTTATGACAAATACGCTTTAGTTCGTCATGCCATCACGCATAAAACTAATAAACCACATCAATGCCGCACTTGCGGTAGAGCATTCAAATTACGTAGCAATTTAGAACGACATTCGCGGGTACACTCTGATATTACTCCGTATGAATGCTCTATGTGTAGCAAGAAATTTAAATACTCGTCAAGCGTGAACTTACACATTCGCACTGTGCACTACAAACTACCGCATCCACCTAGAAAAAAGAGAAACAAGTCGGTCAAAACTAATGCACGTGGAGGTGACttgtga
Protein Sequence: MVSYCCVKGCSNNSNQKKKDLNSLISFHAFPCNQELKTKWLKAIGRPNWVPPSHARICSAHFNRDQINYEGCRIRIIDDAIPVNNLPVNSNFEATNVEACRICLATDLKLYSLGDNKLSSCLDTVIRFNENCNIEGLPQYVCYQCAACLIKYNRLVEKSMIAQATLLDIFAENGQISKSLINQQNRNVLNLNSTLNYCTIKDYYYYNHDGETKSLQKLSLDCTGTHLKDENNEQSGFESDTENETKACKIEIKEHMINEEVKTLEDSHLDSCLNSPINPISDDENYEIEQNTIETNEVLERGRAKSEDRPIGKKVKRKKVDGLTPDETDMQTYFDVVKLSLQEQIEEWKRTVAKRPLTSETVYECEVCTKIFAQVNSYRIHITSHDAARGKVECQVCKLRFKNDVLAKSHANRAHAKKFYCKTCPKVFNNVGVAKKHQRWHAGYRYSCGRCSFSSAHESALGAHARRHARAHTCAACARACLSRRGLRLHVAAAHPHLQISDVTKAYRCEACDINFMTEGARRIHLLTSSQHSKKSNLCDPSTQSSELRNTCSKCGIEFSSFNELVSHTRAEHPRINRKKWRAHDSYPTQCELCSETVTCRQKHWQHVRRQHPKKIDTYRPIVTAICDTCGKGFQNSTKLHLHQLRHRAPTVRCDTCPRLFYDKYALVRHAITHKTNKPHQCRTCGRAFKLRSNLERHSRVHSDITPYECSMCSKKFKYSSSVNLHIRTVHYKLPHPPRKKRNKSVKTNARGGDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00157567;
90% Identity: iTF_00823104;
80% Identity: iTF_00823104;