Basic Information

Insect: Hypercompe scribonia
Gene Symbol: -
Assembly: GCA_949316085.1
Location: OX438995.1:4263541-4277000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.88 94 4.8 0.5 3 13 273 283 272 286 0.86

2 16 0.3 32 6.3 4.5 1 23 293 318 293 318 0.93

3 16 0.0063 0.67 11.6 0.3 3 23 336 357 334 357 0.94

4 16 0.041 4.4 9.0 0.4 3 20 396 413 395 415 0.96

5 16 0.59 63 5.4 0.9 1 23 420 442 420 442 0.86

6 16 3.6 3.8e+02 2.9 2.8 1 23 676 697 676 697 0.95

7 16 0.17 18 7.1 2.8 1 23 708 730 708 730 0.92

8 16 0.00042 0.045 15.3 0.8 2 23 736 757 735 757 0.96

9 16 4.9 5.3e+02 2.4 0.5 1 20 779 797 779 800 0.81

10 16 0.002 0.21 13.1 2.1 3 23 847 867 847 867 0.95

11 16 6.3e-05 0.0067 17.8 1.7 2 23 883 904 882 904 0.97

12 16 4.7e-07 5e-05 24.6 2.4 1 23 910 932 910 932 0.98

13 16 0.00018 0.019 16.4 1.9 1 23 937 959 937 959 0.97

14 16 0.43 46 5.8 1.1 6 23 970 988 966 988 0.93

15 16 0.16 17 7.1 0.4 1 19 995 1013 995 1014 0.89

16 16 0.0029 0.31 12.6 1.7 3 23 1027 1048 1026 1048 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.88	94	4.8	0.5	3	13	273	283	272	286	0.86
2	16	0.3	32	6.3	4.5	1	23	293	318	293	318	0.93
3	16	0.0063	0.67	11.6	0.3	3	23	336	357	334	357	0.94
4	16	0.041	4.4	9.0	0.4	3	20	396	413	395	415	0.96
5	16	0.59	63	5.4	0.9	1	23	420	442	420	442	0.86
6	16	3.6	3.8e+02	2.9	2.8	1	23	676	697	676	697	0.95
7	16	0.17	18	7.1	2.8	1	23	708	730	708	730	0.92
8	16	0.00042	0.045	15.3	0.8	2	23	736	757	735	757	0.96
9	16	4.9	5.3e+02	2.4	0.5	1	20	779	797	779	800	0.81
10	16	0.002	0.21	13.1	2.1	3	23	847	867	847	867	0.95
11	16	6.3e-05	0.0067	17.8	1.7	2	23	883	904	882	904	0.97
12	16	4.7e-07	5e-05	24.6	2.4	1	23	910	932	910	932	0.98
13	16	0.00018	0.019	16.4	1.9	1	23	937	959	937	959	0.97
14	16	0.43	46	5.8	1.1	6	23	970	988	966	988	0.93
15	16	0.16	17	7.1	0.4	1	19	995	1013	995	1014	0.89
16	16	0.0029	0.31	12.6	1.7	3	23	1027	1048	1026	1048	0.97

Sequence Information

Coding Sequence: ATGTCGAAAGTTTCAAGCAAAAGGTCCAGAAAATCTAAATTGACGTGTCGCAATGATGAGTTCGAGGAAAATATGGCAGACTTCCAGAAATCGTCAAATAATATTACGAGTACAAAATCAAATCCTAAAACCCCTCTCGCATCAGCAGCACAAACATACGACGACTTTGAAGCCCTAATTGATTCACAAAAGAAACCCAAAGAAGTCAAACCTCCAAGATTGGAATTTTCCGTTACCGTAGCAGTTGAAGAGTTTAATGAAGATAGCTCAGATTTAATTATAGTAGAAACAAATGAAGAGACGGCTGTTGATTTAATATCCTCAGATTCAGAAATATGTGAAACCCTTGAAGATAAAGATACGAACAGACAGGTTTCTGAATACGTAATAGATTTACCCAGTAAGTTACAGGAAGCGTTAGTCttagatagaaataaaatacttgaagctacaaatgaaatattgaaaaatccAGGGAACATAGCTGATAAAATTCTCGGCATTGAAGTTAGAAATTGTATTGGACAGTATCTGACAAGTTTCGTAAACAAATTCGAAGCTAAAATTCAATGTGTGTTCCTCAAGTGGTTCGATTGGCAAAaatctattgaaataaaattcagaAGTTCACCCTTATTCTACAAGtgttatatttgtaagaaatcttgGTGGTACTTCCATGATTTTCGCGAACATTTAAAAGGGCATGCTGATTTCCAACTGGACTTAGAGGAATATACGATGCATGAAGCAAATATTGTCGCTTATTTAGATCTTGATAATATTGGTGAAACGGATTTTGATACTGAGGGAGATTGTCCGAAATGTGGTTACGACTTTACTTCGCATAAACTGTCTACTAGAAGGAATTCGGCTTACATATGCAAAATAAccaactgtaataaaatatttttcacatgtTTTACTTTGAAAACTCACGAATATATGTTCCACACTCCAGATTTAACATTTCATGAGATACTTGAAACGAGAAAACGTATTTTTTGCAAAGTTTGCAGCCTCGTTTTCTATACACAAGCGTCGTATCAATCTCATGTCAATCTTATGCACACTGTTCGGTCAGATCTGGTCGTTCCCGTGAGGTTGAATAAGTGTCCCTTGTGTAATAGCAAGATTTTGTTAGGGATGTATCATGTTTGTGCagagaaaaaaaacagattgCTGTGTGGGCATTGCTACCGAAGTTTCCAGAAGGATAAGCAGCTTAGAGCTCATATGGCTGCCCAAAACGGACTATATAAGTGTCAGATCTGTAATGAATCCTTGCCAAGACGGTGTCTGGAAGCAGAACATCTGATGAAACATACGGATAAATTTGTAATTGTGAAGAAGTGTTTGATGTGCAAAGATTTTACGGTGTTTTTGGATCACCAAGTGGCTTTTGATCATGTATCGGTTCATTTAAATATGGTGTATGAAGGCAGCAACTACAAATATATAAGCAAAATTTTGATCCCAAAATCGTGTCTCCTACAGCACTTGGAACCCAGAATAGAAATTAAAGAAGAACCGAATGATGTCATTTTAGCTCCCGAATTAAAAGTTGAACAAGATATCATAGACAATTTTGAAACAGACGCAGATGatgaaaacaaattacaaatcaaAGAAGAAATCGATATCCACGAAGATTTTGAATCGGAACACGTGAAACAAGAACTAGTGCAAAAATCAGAAGCAAACCCCGATATTTCAAGAATTTTCGGCATAAAAATCGAAGCAAGCGATATGAAGGAAGAAATGCAGGTCGACGAAGAATCAGAATATGAAGACgacattataaaactagattTCAATTTCCTGGACACGATGCAAGAATCCGTTGAATATTCCACGCAAGATTGTATATTAAAAGTAGAACATATTACAGAGGGAATCCAGAAAGAGACTGATGAAACACAAGACGACGAAGACATGCAAAATGATGAGGAATATTTGGAAGATGATGTAGAAGAAATCGTAGAAGAAAATGAGAACagaaagcaaaataaaatgCCTAAAATTTATAGGTGCAAACGATGTGGTTTTGACGCGACCCATAGAGAATATAGAGATCACATTCAATCACATTGCAGCGAGAAAGTGTACGAAAGGCAAATTTATATGTGTACGAAATGTTCGACcacatttgagaaatttaataactttattgaTCATTTTACCGACCATAATCTCGATCCGTTATCTTGCCCGGAATGTTTTAAATCCTTCAAATCTTACAAAACTATAGAAACACACATAGACACGCATATAAGGATGACGTATGTGACAGTTCAAACCGAGTCGGGGTCTAAGAAGAAAGCCTTTTTCTATTACAAGTGCAAACTTTGCGAGGAGACCATAGAGAAGGTAAACTTCTTTCAGCATTGGGTTGGGCATTTGACATTTATAGAGAAGACAGACGATGCTCCAAAAGACGCTGAAGTATTGGAGGGTAATCGAATTAACAAGGAGATGTTGGATGAATTATTGGAGCGTCTCCAATCTCCAAAGCCAATTTCCAACCTAAGAAGGGGATGTCCCATCTGCGTAagacattttaaaagaaaaaacgacTATAAACGGCATCTTGTTGAGCATCTGCTAAGCCACGCATATTCTCTCCACTatctatataaacatttaaagtgTCAAATATGTGAACACGGTTTCTACAGGCCAGACGACTATAAGAAACACATGCGCGATCATGCCGAATTGCGTGATTATAAATGTCAAATTTGCGATAAGTTTTTCAGCGATTCAAGTAATtatagtaaacatataaaattgcataataaaaatgcatacacttgtgatatttgtaagaagaAATTTCAAGCGAAACATTCGCTTGAGAAGCATATTGtgATTCACAACACGCAGAAACCAATATTCTGTATGCCGTGCAAAAAGACATTCTTCTTAGAGTCAGCTTATAAGAAGCACTTCAGAGTGGTACACTCAAAAGAGGGGCAGACATTTGCTTGTAAGATATGCAAAGTAAGGTTCCGGAGATTAAAAGATAAGTGGGACCATTTATGGCACGTCCACAAGGAGCGGAGTCATAAGGCAGACTGTCCTAAATGCTCAAACTCTTACAGAAAGTTTCGCGATTTAAAAATGCATATGAAGACTGAACATTTGACATATGTCAGAAATCCTAGGGTGagctaa
Protein Sequence: MSKVSSKRSRKSKLTCRNDEFEENMADFQKSSNNITSTKSNPKTPLASAAQTYDDFEALIDSQKKPKEVKPPRLEFSVTVAVEEFNEDSSDLIIVETNEETAVDLISSDSEICETLEDKDTNRQVSEYVIDLPSKLQEALVLDRNKILEATNEILKNPGNIADKILGIEVRNCIGQYLTSFVNKFEAKIQCVFLKWFDWQKSIEIKFRSSPLFYKCYICKKSWWYFHDFREHLKGHADFQLDLEEYTMHEANIVAYLDLDNIGETDFDTEGDCPKCGYDFTSHKLSTRRNSAYICKITNCNKIFFTCFTLKTHEYMFHTPDLTFHEILETRKRIFCKVCSLVFYTQASYQSHVNLMHTVRSDLVVPVRLNKCPLCNSKILLGMYHVCAEKKNRLLCGHCYRSFQKDKQLRAHMAAQNGLYKCQICNESLPRRCLEAEHLMKHTDKFVIVKKCLMCKDFTVFLDHQVAFDHVSVHLNMVYEGSNYKYISKILIPKSCLLQHLEPRIEIKEEPNDVILAPELKVEQDIIDNFETDADDENKLQIKEEIDIHEDFESEHVKQELVQKSEANPDISRIFGIKIEASDMKEEMQVDEESEYEDDIIKLDFNFLDTMQESVEYSTQDCILKVEHITEGIQKETDETQDDEDMQNDEEYLEDDVEEIVEENENRKQNKMPKIYRCKRCGFDATHREYRDHIQSHCSEKVYERQIYMCTKCSTTFEKFNNFIDHFTDHNLDPLSCPECFKSFKSYKTIETHIDTHIRMTYVTVQTESGSKKKAFFYYKCKLCEETIEKVNFFQHWVGHLTFIEKTDDAPKDAEVLEGNRINKEMLDELLERLQSPKPISNLRRGCPICVRHFKRKNDYKRHLVEHLLSHAYSLHYLYKHLKCQICEHGFYRPDDYKKHMRDHAELRDYKCQICDKFFSDSSNYSKHIKLHNKNAYTCDICKKKFQAKHSLEKHIVIHNTQKPIFCMPCKKTFFLESAYKKHFRVVHSKEGQTFACKICKVRFRRLKDKWDHLWHVHKERSHKADCPKCSNSYRKFRDLKMHMKTEHLTYVRNPRVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -