Basic Information

Insect: Hypercompe scribonia
Gene Symbol: -
Assembly: GCA_949316085.1
Location: OX438994.1:4986007-4989585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0023 0.24 13.0 0.5 1 23 43 65 43 65 0.97

2 15 0.029 3.1 9.5 3.1 1 23 70 93 70 93 0.93

3 15 0.47 50 5.7 2.2 2 23 101 123 101 123 0.89

4 15 0.0001 0.011 17.2 1.3 2 23 131 153 130 153 0.96

5 15 0.00019 0.02 16.3 2.6 1 23 159 181 159 181 0.98

6 15 0.0038 0.4 12.2 5.6 1 23 187 209 187 209 0.98

7 15 0.33 36 6.1 0.0 1 13 215 227 215 231 0.82

8 15 1.8 2e+02 3.8 4.6 1 23 319 342 319 342 0.91

9 15 0.84 89 4.9 0.0 2 23 368 390 367 390 0.94

10 15 0.0058 0.62 11.7 4.1 1 23 505 528 505 528 0.92

11 15 0.0056 0.6 11.7 0.2 2 23 555 577 554 577 0.95

12 15 0.00031 0.033 15.7 0.4 1 23 625 647 625 647 0.96

13 15 0.00021 0.022 16.2 0.3 1 23 652 675 652 675 0.97

14 15 0.35 38 6.1 0.1 2 21 683 702 683 705 0.86

15 15 0.18 19 7.0 6.1 1 23 711 733 711 733 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0023	0.24	13.0	0.5	1	23	43	65	43	65	0.97
2	15	0.029	3.1	9.5	3.1	1	23	70	93	70	93	0.93
3	15	0.47	50	5.7	2.2	2	23	101	123	101	123	0.89
4	15	0.0001	0.011	17.2	1.3	2	23	131	153	130	153	0.96
5	15	0.00019	0.02	16.3	2.6	1	23	159	181	159	181	0.98
6	15	0.0038	0.4	12.2	5.6	1	23	187	209	187	209	0.98
7	15	0.33	36	6.1	0.0	1	13	215	227	215	231	0.82
8	15	1.8	2e+02	3.8	4.6	1	23	319	342	319	342	0.91
9	15	0.84	89	4.9	0.0	2	23	368	390	367	390	0.94
10	15	0.0058	0.62	11.7	4.1	1	23	505	528	505	528	0.92
11	15	0.0056	0.6	11.7	0.2	2	23	555	577	554	577	0.95
12	15	0.00031	0.033	15.7	0.4	1	23	625	647	625	647	0.96
13	15	0.00021	0.022	16.2	0.3	1	23	652	675	652	675	0.97
14	15	0.35	38	6.1	0.1	2	21	683	702	683	705	0.86
15	15	0.18	19	7.0	6.1	1	23	711	733	711	733	0.97

Sequence Information

Coding Sequence: ATGACTAATAATACAGATATTATACCATTTAAATTTGACGGAGAAGAGTTACGATGTGCAATATGCGATGCAAGACATTCCACATTTAAGATACTGCAGGAGCACATGCATAACCATTTCAGGAATTACATTTGTGAGATTTGCTCCTCTGGTTTCATAACGAAGCGGTTGCTAGTTCGCCACAAAAGTAGACACGAGCGAGGAGAGTTTAAATGCGGACACTGCGAGAAAACTTTTGTTCGCGATCAGAAAAGGCGGGATCATGAGCAACGGATACATCTTGGTTTAAAAAAGAGAAACAGATGCAAATTATGCAATGAGAAATTTGATGACTACTGGACAAAAATGCATCATATGGTTGACAAACATAATGCTCCACCAATATCCTTGAAATGTAATGCATGTGAACGCACATTTACTAACAGAAGGTCCTTAGCAAGACACGTAAAAAAGGATCATTTAATGGAAAGGGAACATGTATGTAGCATTTGTGACATGCAgttctttttaaaacattatttagaagCACACATGAGGGTTCATACTGGAGTTAAAAATTTCAGATGCCATGTGTGTATGAAGCACTATGCATCTAAGAAATCGCTTCGTCAGCATCTGCGAGCTCATGCCAATGATCGGAAATTTGCTTGCAATGTTTGTGGATTAGCGTTCGTACAGCGAAATCTGCGGTCAACAAGCATAGAACATGAGCCAATCTTTTATGAAGACGAAAGTGAGGAAGAGAAGAAACTGACTCTTAACAGGAAGATGAACTTTTCGTCTTTTGTATCAATTCGTCCGGTGGGCAGAACGGCAATACCTTGGGTCAGAGATCAACAAAGGAGAATTGCTCAGCAGAAACGCATGTCGGAATTAGATTGGCAATTCGATAATATCAGATCAATTTTAAAATGCTCAAATGCAACTCCGGTACGCTGTCGAGTTGGTACTAGATTTGCTTGCAGCTATTGTTTGAATCAGTTTCAGAATCCACATGAGCTAAAGTTACATACGTATCAATGCCATCAAAATGACAAAGCAGAGTTTTTTAATGCGAGATCATTATCCAGACATATAGTTTATCTGGATATTACACAGTTGAAGTGTAAAATTTGCGATGTAGCTATTGGAGGATTGGAAGAAATGATGGATCACTTGAAGACTGAACACAATGAATTAATTCATAAACAGATAAAAAACCAAATCGTTCCATTCAAGTTTGAGGAAGGAAAAATGTTATGTGGTGTCTGCTCTCTTGATATTAGGGAGTATTTAGATATTCAGGATCATATGAGTGAACATTACAAGAACTACGTGTGTACAGAACCAGCGTCCGTACTCATCGAGATAGAAGTTGATACATCGTATATGATTGAATGTGTTGATGATACTCCAGCAGGAGATAGCGAGACACAAGTTGTTAAAAACGAAGTTGAGAAGCACAGAGAGAATATACGAACTATACTACTCTCCACTAATGCTACTCCAATCGGACGGTACGGCAGTCTCGGCTACACCTGCTGTTACTGCACCGAGCAGTACACTAACCCcaagaaactaaaaaaacatacaatagACAGCCACAATGAAGATAATATCTCTCGATTCATGAACAATTATACGATGCTAAATTACATCGTCAAGTTAGACATTACGGCATTAAAATGTGAGATGTGTGTGAAGCCTTTCAATGATTTGTCAGATGTCATTGACCATTTGACGAAAAAACACGAAAAATATTTCCACACAGATATCAAGAGTCACATTGTACCATTTAGATTTGATTCAGAAACACTTTATTGTGTCGAATGCTTGGTCGAGTACGGAAACTTTAAAATTCTATTAGAACACATGAACTCACACTATTGTAATCACATCTGCGAAGTTTGTGAAGCTGGTTTCGTGACTAAAAGAATGCTTCAAGCTCACATGTACAGACACAAAACTGGAGTTTTTCAATGTGGATATTGTCCAAAAATTTTCGACACACGAATTAAAATGAAAGTACATGAAAGAGTAGTGCATATGTACGTGAAAAAGAGGCCTAAATGTGGTGCTTGTGACAAGAAATTTGTAGATTTTAACGACATGGTACAGCATGAAGAGGATGTGCATGGATTGAAAAGAGAGTTCAAATGTGAAATGTGCAACAGAATGTTCAATTGTCAGAAGTCGTTCACTATACACAATAGATATCATTGCGTTTCAGACGATGGTTAA
Protein Sequence: MTNNTDIIPFKFDGEELRCAICDARHSTFKILQEHMHNHFRNYICEICSSGFITKRLLVRHKSRHERGEFKCGHCEKTFVRDQKRRDHEQRIHLGLKKRNRCKLCNEKFDDYWTKMHHMVDKHNAPPISLKCNACERTFTNRRSLARHVKKDHLMEREHVCSICDMQFFLKHYLEAHMRVHTGVKNFRCHVCMKHYASKKSLRQHLRAHANDRKFACNVCGLAFVQRNLRSTSIEHEPIFYEDESEEEKKLTLNRKMNFSSFVSIRPVGRTAIPWVRDQQRRIAQQKRMSELDWQFDNIRSILKCSNATPVRCRVGTRFACSYCLNQFQNPHELKLHTYQCHQNDKAEFFNARSLSRHIVYLDITQLKCKICDVAIGGLEEMMDHLKTEHNELIHKQIKNQIVPFKFEEGKMLCGVCSLDIREYLDIQDHMSEHYKNYVCTEPASVLIEIEVDTSYMIECVDDTPAGDSETQVVKNEVEKHRENIRTILLSTNATPIGRYGSLGYTCCYCTEQYTNPKKLKKHTIDSHNEDNISRFMNNYTMLNYIVKLDITALKCEMCVKPFNDLSDVIDHLTKKHEKYFHTDIKSHIVPFRFDSETLYCVECLVEYGNFKILLEHMNSHYCNHICEVCEAGFVTKRMLQAHMYRHKTGVFQCGYCPKIFDTRIKMKVHERVVHMYVKKRPKCGACDKKFVDFNDMVQHEEDVHGLKREFKCEMCNRMFNCQKSFTIHNRYHCVSDDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -