Hscr032553.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- Znf711
- Assembly
- GCA_949316085.1
- Location
- OX438995.1:4441289-4464880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0091 0.97 11.1 2.4 1 23 367 390 367 390 0.98 2 11 0.0096 1 11.0 0.1 1 23 397 419 397 419 0.98 3 11 2.7 2.9e+02 3.3 1.8 1 23 423 446 423 446 0.92 4 11 0.13 14 7.5 1.9 1 23 453 475 453 475 0.85 5 11 1.7e-05 0.0018 19.7 0.7 2 23 480 502 479 502 0.93 6 11 1.7e-05 0.0018 19.6 1.3 1 23 508 530 508 530 0.98 7 11 0.0029 0.31 12.6 3.6 3 21 544 562 543 567 0.94 8 11 5e-05 0.0053 18.2 2.6 1 23 575 598 575 598 0.94 9 11 0.00021 0.023 16.2 0.8 1 23 603 626 603 626 0.98 10 11 1.2e-06 0.00013 23.2 1.8 2 23 634 655 633 655 0.97 11 11 1.3e-05 0.0014 20.0 1.4 1 23 661 684 661 684 0.95
Sequence Information
- Coding Sequence
- ATGGAAgtgaaagaagaaaatatatttaataatttattatgccATTCATGTTTGAGCGTGGGCAGATACCTAtacaaaattacaaatgaaaaacTGTTAAGATATTATTTGGACGCTTTAGACGAAATTCCTctGAGCAAATCAAAGCGATTCATCGACATTACAGTGTGTTGGGAGTGTAAAGCTGTATTACAGAAATCTTGGTCATTCAGGGAACAAGCCAAAGACAGCTATAGAATACTATTAGCGTACACCAATGAGAATCTCAAGGAGTGTCTGTTCAGCGATGTCTCCCGCCCTCCTCATCTGCAGGTACATCAGATTGAGTCGATCAATATTATTCCTGGAAACAATGAGGATGAGAACCCATCAGCAACTATTCATGTGAAAAATGAATCAATTAATAGTCAGGTTGACTTAAAagTAGACTTAACAGAGGACAGCAGAAGAACTAATGTCTTGAAAGAAGATGGACTAGCAGACGCCTTTGATGACTGTCTCTCTGACAGTGACAATGAAGAAATCAAAACAAATGTAAAGAGCGATACATGGTCTGataaaagagaaggaaaagaaagtaaaagacctgtgaaaagaaaatcaaagagaactaaaaagaatataaagAGACAAGAAGAGAAAAAAAATGAGAACGAGTGTCTATTCAACGATGTCTCTCCTCCACCACACCTGGAGCCGATCAACATTGTATCAGCGCAGGATGCTGGTCAGCATCAGACACATACTATTCACGTAAAGGATGAAATAATCAGCTGCTGGGAGGACATTAAGcatGAATTCAAAGAAGACAGTCTACCAGACGCCTTCGACAGTGACTGTCTGTCAGACACCGCTGACAATAGCAATGATGAATTGAAAGCAAAACTGGAAACTGTCACgtgttcaaataaaaaagtagataaAGAAATTGGAAGAAGTAAAAGTAAGAGAACTAAGAAGATTGTAAAAAGGATAGAAGAGAAGAAAccaaaacacaaaaatatcttCCAAAAAGTTGTAACAATAGAATTGTCCTATGATGATATGTTacaagagagagagaaagacgCGAAAAGAGATAGTTACGTGAAAGCAGAGTTCAAATGTGAGACATGTCTTCTCGGATTTAATTATAAGAAGACTTATCAAGCACATTTGAAAAGTAAACATTCGCCGtCTTTGGGAGAATACATATGTCcaatatgtaaaacaataatacCCTCGGTCGATTCCTTTACTGCGCATTACAAGAGACACACCAGAAGGTACGAATGTATAATATGCCACAAACGTACAACGGACTTGAAAGTCATGGAACAGCATTACTATTCGAACCACGAAATATCTTTGAAGGAATACACGTGCAATATATGTGGGAAAGTCTCTAATTCAGTAGACACTCATCGCTATCACAAAGATACGCACAAGGCGCGGGTACAGTGTACAGAGTGCGACAAGAGTTTCAGGCATAGAGCTGGACTTATGAACCATAGACTTGCAGTCCACGAGTTCCACAACGCGTTCCCCTGCACGGTTTGCGACAAGGTCTTCCGGTGGAAGACCAGCTTGAAGAGACACCTCCAAAAGCATGAGGCTAAGAACAAGTCGAGCATGCCAGCGGAGCCGTTCTGCACGATGTGCAACATCAGCTTCTCCTCGCTGTGCTCGTACCAGCGCCACATGAGGAACAGCCTCAAACATGTCACGCAGGATCAGCTCAAGTTCATATGCGACCACTGCAACCGTCGGTTCTCCGACAAGACCAAACTGCGCGACCACATTGAGGAGAAGCATCTTCATAAGACATACCAGTGTCATATTTGTTCtaagCCGTCCAAGAACCGCGTGGGGCTGGACCAGCACATACGCAACGTGCACATGGGCCGGCCGAAGAACAAAATGTGCCACTACTGTGGCCGCGGATTCCCCACCAAGATGCAGTTGGAATCCCACATCCGAACCCACACTGGCGAGAGGCCGTTCATCTGCGAGTTCTGCCCCACCACATTCTCGCAGCAGAGCAACTTGTATAAACACAATAGACAGGTTCATTTAAACATCAAGACGAAACGTTACCCACTATGCAAGAAGCGTAAAGAAGACGACCCCGAGCAGACGACCAAAGTTCCCGTGTTAGACAACCAACCTGTCATAGAAGAACCCTTTAGACCTATAATCCTGCAATATTCCCCTGGCAGAGAGTTCGTTCTGTAA
- Protein Sequence
- MEVKEENIFNNLLCHSCLSVGRYLYKITNEKLLRYYLDALDEIPLSKSKRFIDITVCWECKAVLQKSWSFREQAKDSYRILLAYTNENLKECLFSDVSRPPHLQVHQIESINIIPGNNEDENPSATIHVKNESINSQVDLKVDLTEDSRRTNVLKEDGLADAFDDCLSDSDNEEIKTNVKSDTWSDKREGKESKRPVKRKSKRTKKNIKRQEEKKNENECLFNDVSPPPHLEPINIVSAQDAGQHQTHTIHVKDEIISCWEDIKHEFKEDSLPDAFDSDCLSDTADNSNDELKAKLETVTCSNKKVDKEIGRSKSKRTKKIVKRIEEKKPKHKNIFQKVVTIELSYDDMLQEREKDAKRDSYVKAEFKCETCLLGFNYKKTYQAHLKSKHSPSLGEYICPICKTIIPSVDSFTAHYKRHTRRYECIICHKRTTDLKVMEQHYYSNHEISLKEYTCNICGKVSNSVDTHRYHKDTHKARVQCTECDKSFRHRAGLMNHRLAVHEFHNAFPCTVCDKVFRWKTSLKRHLQKHEAKNKSSMPAEPFCTMCNISFSSLCSYQRHMRNSLKHVTQDQLKFICDHCNRRFSDKTKLRDHIEEKHLHKTYQCHICSKPSKNRVGLDQHIRNVHMGRPKNKMCHYCGRGFPTKMQLESHIRTHTGERPFICEFCPTTFSQQSNLYKHNRQVHLNIKTKRYPLCKKRKEDDPEQTTKVPVLDNQPVIEEPFRPIILQYSPGREFVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198072;
- 90% Identity
- -
- 80% Identity
- -