Basic Information

Insect: Hypercompe scribonia
Gene Symbol: su(Hw)
Assembly: GCA_949316085.1
Location: OX438985.1:7565669-7576374[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0043 0.45 12.1 0.3 1 20 45 64 45 66 0.95

2 13 0.00045 0.048 15.1 3.2 1 23 78 101 78 101 0.97

3 13 0.051 5.5 8.7 1.2 3 23 110 131 109 131 0.96

4 13 0.00013 0.014 16.9 1.2 1 20 136 155 136 157 0.92

5 13 1.8e-07 1.9e-05 25.8 0.3 1 23 168 191 168 191 0.97

6 13 0.084 9 8.0 7.3 1 23 197 219 197 220 0.95

7 13 0.059 6.3 8.5 0.1 1 23 227 249 227 249 0.97

8 13 0.0017 0.18 13.3 0.3 1 23 254 276 254 276 0.98

9 13 3.1e-05 0.0033 18.8 3.1 1 23 282 304 282 304 0.98

10 13 8.4e-05 0.0089 17.5 0.4 3 23 309 329 308 329 0.97

11 13 0.93 99 4.7 0.1 6 23 342 362 335 362 0.78

12 13 0.00018 0.019 16.4 3.8 1 23 368 390 368 390 0.97

13 13 1.2 1.3e+02 4.3 0.2 3 23 398 421 397 421 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0043	0.45	12.1	0.3	1	20	45	64	45	66	0.95
2	13	0.00045	0.048	15.1	3.2	1	23	78	101	78	101	0.97
3	13	0.051	5.5	8.7	1.2	3	23	110	131	109	131	0.96
4	13	0.00013	0.014	16.9	1.2	1	20	136	155	136	157	0.92
5	13	1.8e-07	1.9e-05	25.8	0.3	1	23	168	191	168	191	0.97
6	13	0.084	9	8.0	7.3	1	23	197	219	197	220	0.95
7	13	0.059	6.3	8.5	0.1	1	23	227	249	227	249	0.97
8	13	0.0017	0.18	13.3	0.3	1	23	254	276	254	276	0.98
9	13	3.1e-05	0.0033	18.8	3.1	1	23	282	304	282	304	0.98
10	13	8.4e-05	0.0089	17.5	0.4	3	23	309	329	308	329	0.97
11	13	0.93	99	4.7	0.1	6	23	342	362	335	362	0.78
12	13	0.00018	0.019	16.4	3.8	1	23	368	390	368	390	0.97
13	13	1.2	1.3e+02	4.3	0.2	3	23	398	421	397	421	0.83

Sequence Information

Coding Sequence: ATGCCGCCAAAACGTAAAAAAGGAAGGCCGCCAGGGTCTAAAAATAAGAAGCCCTCTGTAAAAGATCTCGCAAATAAGTTGGCTAAGATAAAACGGAATAATATTGAGGAATCAGCTAAAATACCTACTGATTTTCAATGTTCTGTATGTCTCAAGTATTTCCCATCCAGGAAAGCGCTACTGAAACATAAGGCTATAGAAGTATCTAAAGTAATATATACAAAGTCACCATTCAGTTGTCAAGAGTGTCGCAAGAAATTCagatttgaaaaaagttaccaGAAGCATCTCCAAATTGAACATTCCAAATTACCAAACAGTGTTGCATGTGACAAATGTCATGTACGCTGTCCAGATGAGGCTAGCTTAGAGGAGCACACACAAAAAGTTCATGAAAGAAACATGTTTTTGTGTCCACATTGCAAAAAGGAATTTGTAAGGTCTTCCCATGTTTTAAGACACCTGGCGCAGAGCGGATGTGGTGGAAAGAATCCTTCTCATTATTCTTGTGAAGTATGTGATGCAACATTTTCAAGAAAAGATAATTTAACAGTACATATTCGTTTACAACATATCTTCAGAAAAGATTATATTTGTAAGTACTGTAAATTCAGTACCAAGAACTTTTCAAAACTAGTGAACCATTGGCATAAGCATCATTCAGAAACACCTGATCAGTATCAATGTGATGAGTGTTCAAAATGGATCAGCTCTCGTGCAGCTATGATGAAGCATCTGGAAATACACGGGGAGAAGAAATATTCCTGTGACATGTGTGGATACAGCACGTACACAGTAGAGGTGATGCGCCGCCACATTCTTACCCACGTAGAGGACAAGCCACACAAGTGTAATTTATGCAATCGTTCTTACATTCAGCGTGTTCAGTTGCAGCGACATCTGGAGAAACATATGGGCAACATGTGTACTGAGTGCGGTCAAACATTCTCTTCCAGAGCCAAaatgcTGGTACACCTGCGGGAGCACATGGGCTTGGAAAAATTACGCTGCCCACTTGAATCATGCCCATATTCCACAAAGGATTTCATCAACGAAGCGAGTTTGAACTATCACCTAAATGTACATTTGGATAATAAGcCGCACAGTTGCGACGTGTGCGAGAAGAAGTTCCACTCGGAGATAAACCTGAAGCGTCACCTGGAGACGCACACGCTGGACCGGCCGCGCCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCATCCGCCACGTGCGCAAGACCCACCCCGACGCCTTCCGCGCGCACCTGCTGCACGTGCGCACCGTGCTCgGTGCAGGTAACACAACAGAGAGAGTGAAAAAATCAGAAATAGAGTCGATCCTCAATCTTTTGGATGCGGAGGCTGATCGTATTCTGCAAGGGTACAGCGGGTCGGGGGTGCTTTACGGTGGCATGCAGGAAGATGTTATCGTTCCCATGGAACACTCGACAGAAAAAAAAACTAACAACCCCCTAATGTCAGAAGAAGATTTGGCTGAGAATTTGAGTAAATTAATTACGCAACTCATCGATCAGGAGACGCTCAGTTTGTTCGGTTGGCCCGATGAGACTGTCGATGTGGTATTAGAGAAAGTAATAGAGCAATGTGGAGCTCGTCCAGCGGATCGTGAGAAATGGAATCGAGTACAGCGCCTACGGGAAAACACAAAGCATTTGTTTTTGTATGTCATTGAAGATAGAAATATCGCGCGAATGCTCGATACACACACAATCGATCAAATCGTTACGCACATACTTAAGCAGGTCTCTGAAGATGATTCCATAGAAAGTAAacaatga
Protein Sequence: MPPKRKKGRPPGSKNKKPSVKDLANKLAKIKRNNIEESAKIPTDFQCSVCLKYFPSRKALLKHKAIEVSKVIYTKSPFSCQECRKKFRFEKSYQKHLQIEHSKLPNSVACDKCHVRCPDEASLEEHTQKVHERNMFLCPHCKKEFVRSSHVLRHLAQSGCGGKNPSHYSCEVCDATFSRKDNLTVHIRLQHIFRKDYICKYCKFSTKNFSKLVNHWHKHHSETPDQYQCDECSKWISSRAAMMKHLEIHGEKKYSCDMCGYSTYTVEVMRRHILTHVEDKPHKCNLCNRSYIQRVQLQRHLEKHMGNMCTECGQTFSSRAKMLVHLREHMGLEKLRCPLESCPYSTKDFINEASLNYHLNVHLDNKPHSCDVCEKKFHSEINLKRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKTHPDAFRAHLLHVRTVLGAGNTTERVKKSEIESILNLLDAEADRILQGYSGSGVLYGGMQEDVIVPMEHSTEKKTNNPLMSEEDLAENLSKLITQLIDQETLSLFGWPDETVDVVLEKVIEQCGARPADREKWNRVQRLRENTKHLFLYVIEDRNIARMLDTHTIDQIVTHILKQVSEDDSIESKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824097;
90% Identity: iTF_00824097;
80% Identity: -