Basic Information

Insect: Hypercompe scribonia
Gene Symbol: -
Assembly: GCA_949316085.1
Location: OX438994.1:5110124-5112551[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.9 4.2e+02 2.8 1.9 1 23 17 40 17 40 0.93

2 17 3.8 4e+02 2.8 1.6 3 23 68 89 68 89 0.92

3 17 0.13 14 7.4 1.8 2 23 112 134 111 134 0.94

4 17 0.012 1.3 10.6 0.3 1 23 138 161 138 161 0.93

5 17 0.00014 0.014 16.8 0.1 3 23 166 187 165 187 0.94

6 17 0.065 6.9 8.4 0.1 2 23 193 215 192 215 0.93

7 17 0.0078 0.84 11.3 1.9 2 23 223 245 222 245 0.92

8 17 0.75 80 5.0 4.0 1 23 293 316 293 316 0.93

9 17 0.99 1.1e+02 4.6 0.8 3 22 343 362 341 364 0.84

10 17 0.052 5.5 8.7 2.9 2 23 387 409 386 409 0.93

11 17 0.0018 0.19 13.3 0.0 1 23 415 438 415 438 0.94

12 17 3.2e-06 0.00034 21.9 0.4 2 23 444 466 444 466 0.96

13 17 0.0018 0.19 13.3 0.4 2 23 472 494 471 494 0.93

14 17 0.0019 0.2 13.2 1.0 1 23 501 524 501 524 0.96

15 17 0.00045 0.048 15.2 0.3 3 23 532 552 531 552 0.94

16 17 6.4e-05 0.0068 17.8 3.2 1 23 558 580 558 580 0.99

17 17 3e-05 0.0032 18.9 0.9 3 23 588 608 586 609 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.9	4.2e+02	2.8	1.9	1	23	17	40	17	40	0.93
2	17	3.8	4e+02	2.8	1.6	3	23	68	89	68	89	0.92
3	17	0.13	14	7.4	1.8	2	23	112	134	111	134	0.94
4	17	0.012	1.3	10.6	0.3	1	23	138	161	138	161	0.93
5	17	0.00014	0.014	16.8	0.1	3	23	166	187	165	187	0.94
6	17	0.065	6.9	8.4	0.1	2	23	193	215	192	215	0.93
7	17	0.0078	0.84	11.3	1.9	2	23	223	245	222	245	0.92
8	17	0.75	80	5.0	4.0	1	23	293	316	293	316	0.93
9	17	0.99	1.1e+02	4.6	0.8	3	22	343	362	341	364	0.84
10	17	0.052	5.5	8.7	2.9	2	23	387	409	386	409	0.93
11	17	0.0018	0.19	13.3	0.0	1	23	415	438	415	438	0.94
12	17	3.2e-06	0.00034	21.9	0.4	2	23	444	466	444	466	0.96
13	17	0.0018	0.19	13.3	0.4	2	23	472	494	471	494	0.93
14	17	0.0019	0.2	13.2	1.0	1	23	501	524	501	524	0.96
15	17	0.00045	0.048	15.2	0.3	3	23	532	552	531	552	0.94
16	17	6.4e-05	0.0068	17.8	3.2	1	23	558	580	558	580	0.99
17	17	3e-05	0.0032	18.9	0.9	3	23	588	608	586	609	0.95

Sequence Information

Coding Sequence: ATGATACAATGCACCACAATTACACCCTTCAGATGGCACAAAAGCAAGTATATGTGCTTTTATTGCTGTGCGTTATTCGTAGAAAGCTCTAAACTTAAAGAACACACAGAATCAGACCACCAAGAGATATCAATTGAAGAAGTAATCGTTAGAACTCTGTACAGGAACGGTAAAATCAAAATTGAAGTCTCCGATATTTGGTGTTCCAGATGTGAAACTCAATTTAACAGTTTCTTGGAATATTTCAAACATCTGTCCTTTGTCCATGGGATAGTATTAGATAAAGATACCGTAAAAGCGTTCGAATGCTTTAGCTTAGGAGATAACGGAATGTCCTGCTTGGATTGTGGACAAAATTTCAGATTCTTTGGACCTCTACTAAGTCACAGACACAAGTATCACAACGAACATTTTCTGTGTGAAGTGTGTGGCCAAGGTTTTGTTGAAAAACACAACGTCGACAATCACGTGAAGCAAATACACAGCATCAAGGCGTGTAAATATTGTGACATGACCTTTCCCACACAATATTCTTTAGGAAACCATATTGAAAATGTTCATAGAACAGATAAACTGAAGTGTCCATTGTGTCCGGAGATTTTGGGGAATAGGTACTTGAAGAAGCGTCATATGGCTTTGGTTCACGACTGTAAAAGTGCGCAAATCGTGTGCGAGTACTGCTCGAAAATATTTACCAGACACAATAAGTATGTTCAGCATAAATCAAACGTCCATTTTAAGGAGAAGAACTATTACCAGTCCTTGACTGCAGATGAAAGGTATGCTGAGAAACGTCGCAAAGACGATCTGACGAAACTGATCACAATCGTACTGGAGAATTCCAACATCATGCCGTTCCGGTGGGCAGCCAACAAGTACATGTGTTTCTTCTGTTGCTGCACTTTTGTTGATAGCGTCCAACTAAAAGCACATACACTAGAAGAACACAAAGATGCTAAATTGAGAAGAGTTTTGAGGACATTACTCGGCAGTAGTCGGGTCAAGTTAGATACTTCGCAAATCGCATGCAAAAGGTGTTCGAAACATTTCGATAATTTCGACGTCTTTCTCGATCACGTTTACGAAATTCACGATTTGAAATTCAATAAAGACATTGCCAAATGTCTTTTTACTTTCAACCTGTCAGACGATGGAATGTCTTGTCATGAATGTGGACAAGAGTTTAGATTCTTTGGACCGCTACTCAAGCATGCTCACAAGTTCCACAATAAATATAAGACATTCCTTTGTGAAATATGTGGGCAAGGGTTTGTAGCGAAAGCAAACGTAGAAAGTCACATTAAAAACGTTCATAGTTTGAAAGATAGACAATGTCAAAAGTGTGATAAAGTATTTAGGAACCCCTACGCTCTGCAGGTACACCGCGAAAGAGCCCACAGAACTGAATCTTTGAAATGTCCAAAATGTCCTGAGTATTTTGCGTCGAAGTATCTCAAGAAACGTCATCTAGCGTTAGTGCATGATGTCAAAAAACTTCAGTTCAGTTGTGACGAATGTGAAAGAGTTTACACAATGAAGAGTAGACTGGTCCAGCATAAGTTGAGAACGCATTTGAAGCAAAAGACTGTCGCTTGCGAGATTTGTGGctttaaagtttttaacaatGATTTGCTAAAGCGACATATGGTTCGCCATGATGACTCTAGACCATTCCAATGCGAGTTCTGCAAGAAAAGTTTCCAGAGAAAAAAGACTTTGGACGTTCATACAAGAATACATACGAACGATAGGAGGTATGGATGTAAGGAGTGTGGGAGGGCGTTTGTTCAAGTTACCAGTTATAAACTTCATATGCGAGTACATCATAGAGTGAACGAGGGTTCTTCGTGGAACTAA
Protein Sequence: MIQCTTITPFRWHKSKYMCFYCCALFVESSKLKEHTESDHQEISIEEVIVRTLYRNGKIKIEVSDIWCSRCETQFNSFLEYFKHLSFVHGIVLDKDTVKAFECFSLGDNGMSCLDCGQNFRFFGPLLSHRHKYHNEHFLCEVCGQGFVEKHNVDNHVKQIHSIKACKYCDMTFPTQYSLGNHIENVHRTDKLKCPLCPEILGNRYLKKRHMALVHDCKSAQIVCEYCSKIFTRHNKYVQHKSNVHFKEKNYYQSLTADERYAEKRRKDDLTKLITIVLENSNIMPFRWAANKYMCFFCCCTFVDSVQLKAHTLEEHKDAKLRRVLRTLLGSSRVKLDTSQIACKRCSKHFDNFDVFLDHVYEIHDLKFNKDIAKCLFTFNLSDDGMSCHECGQEFRFFGPLLKHAHKFHNKYKTFLCEICGQGFVAKANVESHIKNVHSLKDRQCQKCDKVFRNPYALQVHRERAHRTESLKCPKCPEYFASKYLKKRHLALVHDVKKLQFSCDECERVYTMKSRLVQHKLRTHLKQKTVACEICGFKVFNNDLLKRHMVRHDDSRPFQCEFCKKSFQRKKTLDVHTRIHTNDRRYGCKECGRAFVQVTSYKLHMRVHHRVNEGSSWN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -