Basic Information

Insect: Hypercompe scribonia
Gene Symbol: -
Assembly: GCA_949316085.1
Location: OX438978.1:14833192-14848979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00043 0.046 15.2 0.2 2 23 143 164 142 164 0.93

2 11 0.00062 0.066 14.7 2.4 1 23 170 192 170 192 0.96

3 11 4.3e-05 0.0046 18.4 0.3 1 23 282 304 282 304 0.98

4 11 4.4 4.7e+02 2.6 0.5 2 23 311 333 310 333 0.91

5 11 0.00065 0.069 14.7 0.0 3 23 386 407 384 407 0.90

6 11 0.00032 0.034 15.6 0.1 1 23 421 443 421 443 0.93

7 11 1.5e-05 0.0016 19.8 0.2 1 23 483 505 483 505 0.98

8 11 0.00067 0.071 14.6 0.2 1 23 511 533 511 533 0.97

9 11 0.00038 0.04 15.4 0.3 1 23 539 561 539 562 0.95

10 11 0.043 4.6 8.9 1.7 1 23 575 597 575 597 0.96

11 11 0.0088 0.94 11.1 0.1 1 20 745 764 745 767 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00043	0.046	15.2	0.2	2	23	143	164	142	164	0.93
2	11	0.00062	0.066	14.7	2.4	1	23	170	192	170	192	0.96
3	11	4.3e-05	0.0046	18.4	0.3	1	23	282	304	282	304	0.98
4	11	4.4	4.7e+02	2.6	0.5	2	23	311	333	310	333	0.91
5	11	0.00065	0.069	14.7	0.0	3	23	386	407	384	407	0.90
6	11	0.00032	0.034	15.6	0.1	1	23	421	443	421	443	0.93
7	11	1.5e-05	0.0016	19.8	0.2	1	23	483	505	483	505	0.98
8	11	0.00067	0.071	14.6	0.2	1	23	511	533	511	533	0.97
9	11	0.00038	0.04	15.4	0.3	1	23	539	561	539	562	0.95
10	11	0.043	4.6	8.9	1.7	1	23	575	597	575	597	0.96
11	11	0.0088	0.94	11.1	0.1	1	20	745	764	745	767	0.93

Sequence Information

Coding Sequence: atggatGGAGAAGGAGTAGACTTCAGTCTCCAATGGGAGGAGGTTGTAATTAAAcatGATCCCAATGAAGTTGTAAAAGAAGAGGTCATATCTCAACTAGAAAATGTTCAAAGTGTCACATATTCAAATATGACTGAAGAAGAAATAATTGCTAACACGGATCAAATGGCTGCAGAAAACTTAATGTACCTATCACAAGATGTAGTGGGGAGTTATACTGAGACTGCTGAATTAGCCGATGACCCGAATGTAGAATGTGTTACGGAAGAAGTTATTACAGACGATTGGGTCATTCCTGGAGGACAAGAAAGAGTGGAAGTACCTATAGAGCACTTTACGCATCCAGTTGCAGATGTTAAAGAAGAAAATGACCTTGATGTTCCTTTACCAACTGATCAAGATGAATACACAGCTATGCGACCATGGCCGTGTGACTTTTGTTCACGACGATTTCGGAAGAAAGCTGCTCTTATGAATCACATGGTGGCCCATCAAAACGATAGGCCCCATGCCTGTAACCTCTGTGGAGTGCGATACGTTCGCAAGTGTGATCTCATGAACCATCTTAAAGTGCATGCTTTTGCACCAGACAATACTGATTCCATAGATTATGAACTTTTAGACAGTAATCAAGTTGTCAAGCCAAAGAAAAAGCGAGGTCGACGGAAAAAGAACCCTGAATTGGCAGAGaATGGAGTATGGGAAAACATGACGTCAGCTCGGACGCAGCAGTGGTCACGGCGTGCCCGGTCGCCTCCAAAGCCACCGGCCACTCCTCCTTCTCCGCCGTCCGAGCCTTCGCCACCTTCACCACCTCCGCCGCCAACGGATCCCTCCAGACCTTTCGTTTGCAGGCATTGTGGAATTGGATTTGCTAGGGAAAAAGCTCTTCAATCACATGCTagaGTTCACGGTGGGGATTCCCCGGTGGAGTGTGGCACTTGCGGCGAGCTGTGTTGGTCGCGCGAGGCGCTCAACTCGCATACACAACAGCGACACCCGCACTTGCCACCCAAGACCGAGCTGCAGGACCCGGACTACGACGACTCGGATTCAGACGACGACATGGACTTCCGTTTATCGCCTCTGTCGCACGGCGGGGGCGGCGGGTCGGAGCGCGCCGTGTACGACACGATGCGGGGCCCGGAGCTCTTCTGCCAAGACTGTGGAGTCGCCTTCCAGAGGGCGGACCTGCTGCGCAGACATGTTGCGGCGGCTCACAGTTACAAGCGACACGACAGCACGAGCACGTGGGGCGAGCACACGTGTGACACGTGCGGCGAGAGCTTCAGTGACGCATTGCAACTACTGGCCCACGCCGAGGGACACGCCGAGCGGCACCGCACCACCGCCACGCACTCCGCCCACTCCGCCCACTCGGCGCCTAGGTTGAAGAGAACGTCAAAAGGTAGAAACAATACGTCAGTATCGAATAGTTCACGGCAGTTTCCCTGCAGAGTATGTGgtaaagtatttggatctcgGAGTTCTCAACAAATCCACATACGAATACACACGGGGGAGCGCCCGTATGCTTGTAGGTTTTGTTGGAAGGCATTCGCAGATGGAGGCACATTGAGGAAACATGAACGAATACACACAGGTGAAAAACCATACGCGTGTGCGGTGTGTCCGCGCGCCTTCAACCAGCGCGTGGTGCTACGCGAACATGTTCGCTCGCACCACTCCGCTCCCGACCGGCGAGCTAACGGTGGTCCTGCTTATTGTTGCGTAGTTTGCAATCGGACGTTACATTCTAGTGCTGAACTCGTTCAACATTTAATCCAACATTGTGATGCCAACACTGCTCTCAAGAGACAACCACAGACGGGACCGCGCAAATACAAACGGCGGCGGAAACTAAAGACCGAGCGGTCCCCGCCCTCGGCCCGCGAGTGGGCGCAGTCGCCCACGCCGCCGCCCGCCACGCGCTCGCCCTCCCCCGCCTCCGAGTCGGACGCGGGCGCGTCGCCGCCCTCGCCGCCCTCCGCGCCCTCCCCGCCGGCCccggcgcggcggcggcggcgcgccTCGCCCCCGCCCGCAGCGCCGCCGCGGCCGCGCATGATCCACACCGGCGAGCGAGCGCGCGCCGGCCGCGCGCGCACCGAGCGCAGCGAGCGCGCCGAGCGGGCGCGGGCGCGCCGCCTCCCGCCGCGCCGCCCCGCCGACGACCTGCGCGCCATCCGCCCGCGGCCCGAGCCCGAGCCCGAGCCCGACACCGACGGGCCCTTCAAGTGCGAGATGTGCTCGCTGGAGTTCCCGCGCCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
Protein Sequence: MDGEGVDFSLQWEEVVIKHDPNEVVKEEVISQLENVQSVTYSNMTEEEIIANTDQMAAENLMYLSQDVVGSYTETAELADDPNVECVTEEVITDDWVIPGGQERVEVPIEHFTHPVADVKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFAPDNTDSIDYELLDSNQVVKPKKKRGRRKKNPELAENGVWENMTSARTQQWSRRARSPPKPPATPPSPPSEPSPPSPPPPPTDPSRPFVCRHCGIGFAREKALQSHARVHGGDSPVECGTCGELCWSREALNSHTQQRHPHLPPKTELQDPDYDDSDSDDDMDFRLSPLSHGGGGGSERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSTWGEHTCDTCGESFSDALQLLAHAEGHAERHRTTATHSAHSAHSAPRLKRTSKGRNNTSVSNSSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCNRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTERSPPSAREWAQSPTPPPATRSPSPASESDAGASPPSPPSAPSPPAPARRRRRASPPPAAPPRPRMIHTGERARAGRARTERSERAERARARRLPPRRPADDLRAIRPRPEPEPEPDTDGPFKCEMCSLEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00157451;
90% Identity: iTF_00157451;
80% Identity: -