Hscr032916.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438995.1:7166481-7181848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0022 0.23 13.0 1.0 1 23 226 248 226 248 0.98 2 12 0.5 54 5.6 2.0 1 23 255 278 255 278 0.93 3 12 0.093 9.9 7.9 3.6 1 23 282 304 282 304 0.96 4 12 0.00011 0.012 17.0 3.9 1 23 309 332 309 332 0.98 5 12 0.00028 0.03 15.8 1.9 1 23 336 359 336 359 0.95 6 12 0.011 1.2 10.8 0.1 2 20 377 395 377 396 0.94 7 12 0.63 67 5.3 0.1 2 23 410 430 409 430 0.94 8 12 0.00022 0.024 16.1 1.5 2 23 455 477 454 477 0.95 9 12 2.6e-05 0.0028 19.1 3.3 2 23 487 508 486 508 0.97 10 12 2.2e-05 0.0023 19.3 1.8 1 23 514 536 514 536 0.98 11 12 1.4e-07 1.5e-05 26.2 0.3 1 23 542 564 542 564 0.98 12 12 1.3e-05 0.0013 20.0 1.0 3 23 572 593 570 593 0.97
Sequence Information
- Coding Sequence
- atggagaagCTGTCTATGTGTAGAATTTGTTTAAAAGACAATATATATATGGTGTTGCTAAGTAAAACGCATCTTCAAGAAATATATGAAAAGCTGACTGCGACGCCGTTTGAAACTGAAGACAGCAGACCATTACAAGTTTGTTACATCTGCTGTGCCCGGCTCCAGAACTGCTATAAACTCCAAATGTCCTGCCTACAGAGTGAGAAGCTGTTCGCGGAGATGATTAAGAGCAATTTGCTGAAACCTTTGAAATTACCAGAAACCTCTGGTGCTCTGATGCTGGTCATCAGTCCAGTTGTACACTTCAGTACCTTGGATATAGATCAGGATGCAGAAGCAGTCAAGACAGAAGGCTCGGGAGAATTTGATGCTGTTGAAGTTAAATTGGAAGAATCTGAAGctGTCAAGAATGGAACTCTAGAATTAGATGAGGTGGAAATGGATGTTCAAATCCAATCTTCAGACCCAGAGGATGATATACCGTTAAAAGTGATCAAGAATGAGTCGGAGAGAAAAGTTAGACGAAAGAAGAGAGTCAGGGTTAGAAGAGAGAAATCAGAAGATATTAAAACTAgtTTCAAAGTGGATGCTCACGAGATTATTCTGTCGAAAGATGAGCAAGTGGCCAACTTGATGGCCAGGTCCAAGACCTTGAACTACACTCTGTCACCATACAAATGTGATCTGTGCTACAAAGGATTCGTGGACACCAAGGCATATGAGAACCATAAGATCAAACACGATGAGcgcagcggtagtcacTCATGCGAAATATGCTGTATGCGCTACCGCTCCGCCCAACTCCTTCGCACACACGCCGTCACAGCGCACTCACGACTCTTCAAATGCAATAAATGTGGACACACTACACATACTGCGAACCAGGCAAGAGTACATGAGAAATGGCACAGCGGGTTTACATATGAGTGTCAATTATGTGGTCATAAGTTCagGAAACCAACGTCTTATCTATCCCACATGAGGAAACGCCACCCAACTGAGCATGTGTGCAACATTTGTGGAGAAAGCTTCGTCGGTAAGCATGGCCTGCAGATGCACAAGAGTAAGAGTCACAAGAATGATGCAGCGGTGAAAGAGACCAGCGAGGAACCAGAAATTGACAGATACTGTACCGAGTGTGATATCCAGTTCTTCACCAGGGAAGCTTGGAAGAGACATATACTGTGTTCAGTGAAACATACTCTGAGAAATGAAACTAGCTCCTCATGTCAGATCTGCGGATGGCGTGGCGACAGCACGGCCCTGGGGTTGCACCTGCGCCAGCACGCCCGAGCATTGCGCCGCAACCCCCTCAACCCCATGACAACCCTCACACAACGCCCCGACCACCAGCACTGTCGCTGTGCTCAGTGCGGTTTGAACTTCATGAGCAGATCAAAACTGCAAGCTCACATCAACAGAATACATCTTGGACTCAAATACAATAAGAATATAGTGTGCGAAGTATGCGGCAAACATTGTACGTCAAACGCGACCCTCAGATATCACCAACGAACCCACACAGGGGAAAGGCCCTATTCCTGCACAGCATGTTCAAAGCAGTTCACGGACAGCAACCAGCTAAGGATACACACACGGACCCACACTGGGGAGAAGCCCTACGAGTGTGCCGTGTGTGGGAAGAGGTTCAGTCAGAAACCTGCCCTGAACAGACATTATAGGGTACACACAGGTGATAAGCCATACGGATGTCAGTACTGCTCAAGAACGTTCAGCCAATCCAATTCTCTGAAGCTTCACGTCCGAACGGTACATTTAAAACTACCCGCAAACAGCAGAAAGAAGATACAAGAGAAAGGGCAAGAAGAGAGTGAAAAGAATGATAAGAAACTTCTTGTTATAAGTCAGACGCAGGAAACTGTTTCAtga
- Protein Sequence
- MEKLSMCRICLKDNIYMVLLSKTHLQEIYEKLTATPFETEDSRPLQVCYICCARLQNCYKLQMSCLQSEKLFAEMIKSNLLKPLKLPETSGALMLVISPVVHFSTLDIDQDAEAVKTEGSGEFDAVEVKLEESEAVKNGTLELDEVEMDVQIQSSDPEDDIPLKVIKNESERKVRRKKRVRVRREKSEDIKTSFKVDAHEIILSKDEQVANLMARSKTLNYTLSPYKCDLCYKGFVDTKAYENHKIKHDERSGSHSCEICCMRYRSAQLLRTHAVTAHSRLFKCNKCGHTTHTANQARVHEKWHSGFTYECQLCGHKFRKPTSYLSHMRKRHPTEHVCNICGESFVGKHGLQMHKSKSHKNDAAVKETSEEPEIDRYCTECDIQFFTREAWKRHILCSVKHTLRNETSSSCQICGWRGDSTALGLHLRQHARALRRNPLNPMTTLTQRPDHQHCRCAQCGLNFMSRSKLQAHINRIHLGLKYNKNIVCEVCGKHCTSNATLRYHQRTHTGERPYSCTACSKQFTDSNQLRIHTRTHTGEKPYECAVCGKRFSQKPALNRHYRVHTGDKPYGCQYCSRTFSQSNSLKLHVRTVHLKLPANSRKKIQEKGQEESEKNDKKLLVISQTQETVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441800;
- 90% Identity
- -
- 80% Identity
- -