Hscr019598.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- zfy1
- Assembly
- GCA_949316085.1
- Location
- OX438981.1:18692613-18694040[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.14 13.7 0.0 3 23 158 178 156 178 0.97 2 11 4e-05 0.0043 18.5 4.4 1 23 184 206 184 207 0.95 3 11 0.0035 0.37 12.4 0.4 1 23 214 236 214 236 0.98 4 11 0.00011 0.012 17.1 1.0 1 23 242 264 242 264 0.98 5 11 7e-05 0.0075 17.7 4.6 1 23 270 292 270 292 0.98 6 11 5.3e-06 0.00056 21.2 3.3 1 23 298 320 298 320 0.98 7 11 3e-06 0.00032 22.0 0.3 3 23 328 349 327 349 0.97 8 11 0.014 1.5 10.5 0.7 2 23 355 373 355 373 0.94 9 11 0.00014 0.015 16.8 0.8 1 23 379 402 379 402 0.91 10 11 0.0093 0.99 11.0 1.1 1 23 408 432 408 433 0.95 11 11 2.8e-05 0.003 18.9 4.9 1 23 439 462 439 462 0.97
Sequence Information
- Coding Sequence
- atggAAACAAGAATTTGCCGCATCTGTCTTAACAACACCGCATCGATTTCCTTATTTGATTCACAGGAAGATGTACAATATAGCACGAAGATAATGAGATGTGTGAATGTGGTGATTGTGGAAGGTGATGGTTTACCAGATGCAATATGTACAAGCTGTGTCTCAGACCTGTGTACTGCATACGATTTTGTAAACAAGTGCGAAGCATCAGATAACGCACTCCGATGCATTAAAATTACTGACCAAAAAGACGACTTATCAAAACCCGAAACCGAAATAAAATTGGAAACTATTAAGCAAGAAGTATGccaagatgatgatgataatcccTTTGATTGTTTCTTATTAAAAGAGCACAGCGACCCGCGTCTCTATGATGTTAAGAaacgtagaaaaaaatataagaaatctaAAAAATTTCAAGAAGCATTAGATAGGCGAAAAAAGAAGTCTAAATCGGGACCTGTTATCTGTGTTGTCTGTGGTTATGTGGGGGCCAGCCGCTCTGCCATAGAGAATCACATGAGAACACACACTGGAGAGAAACCTTTTATATGCCACTATTGCAATGCCAGATTCAACCTTAAGGGCTCACTCAAAAGACACATACTCACACACCACAcacaaagagaaaggaaatttATTTGTGAAACTTGTGGTAATAgctttttaactaaaaatagtATTGTAACACATATGAGGGTACATACAGATGAGAGACCCTATATTTGTTCCTTCTGCTCTAAAGCGTTTAGACAAATTGCTTCAATGATTCGTCACAAGCGTATGCACACTGGGGAACGCCCCTATACATGTCTCACCTGTTTCAAAAAGTTTAAAGACAAAAGCCATATGATGAGACACCAGGCCGTCCACAGTAACGAGAAGAACTTCACTTGTCATCTGTGTAGTAAGtcagttaaaacaaaaaatgcactTAAGAGTCATATGCGGATTCATTCCAACGAGAAACACAACATATGTAGCTATTGCGGGATGACATTCTCTTTAAAAGGTAATCTGCAAGTGCATATAAAAAGAATACACTCTGAAAAGTCTGGTGAGTGCACCGAGTGTCAAAAAACATTTCCAGATTTAGTGTCACATATGCGTAAGCACACAGGGGAGAAACCATTTGTTTGCAAGTTGTGTGACCAAGGATTTGTGAGTAAGAGGAGCTTGTCTAACCACATGGTGTTTAGACATGAGAATGCATCAAAATTCAAATGTTCTATAGGGGAGTGTACAAAAACTTTCCCTACGGCTATGATGTTAGAGTTTCATTTGTTAAAACACCACACAAATCATACTCCATACATTTGTCATCACTGCTCTAAAGGCTTCTTCCGGACCAGTGATCTGTCTCGTCACCTTAGAGTGAGTCACATGGACACACTCAAAGTGCCTGGGAAAAGTCTGGTTGTGTAA
- Protein Sequence
- METRICRICLNNTASISLFDSQEDVQYSTKIMRCVNVVIVEGDGLPDAICTSCVSDLCTAYDFVNKCEASDNALRCIKITDQKDDLSKPETEIKLETIKQEVCQDDDDNPFDCFLLKEHSDPRLYDVKKRRKKYKKSKKFQEALDRRKKKSKSGPVICVVCGYVGASRSAIENHMRTHTGEKPFICHYCNARFNLKGSLKRHILTHHTQRERKFICETCGNSFLTKNSIVTHMRVHTDERPYICSFCSKAFRQIASMIRHKRMHTGERPYTCLTCFKKFKDKSHMMRHQAVHSNEKNFTCHLCSKSVKTKNALKSHMRIHSNEKHNICSYCGMTFSLKGNLQVHIKRIHSEKSGECTECQKTFPDLVSHMRKHTGEKPFVCKLCDQGFVSKRSLSNHMVFRHENASKFKCSIGECTKTFPTAMMLEFHLLKHHTNHTPYICHHCSKGFFRTSDLSRHLRVSHMDTLKVPGKSLVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157418;
- 90% Identity
- -
- 80% Identity
- -