Hscr031582.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438994.1:4923917-4935531[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.024 2.5 9.7 1.7 1 23 257 279 257 279 0.96 2 19 0.4 42 5.9 1.7 2 23 306 328 305 328 0.94 3 19 0.0019 0.2 13.2 0.2 1 23 351 373 351 373 0.98 4 19 3.7e-06 0.00039 21.7 0.7 1 23 377 400 377 400 0.98 5 19 0.0025 0.27 12.8 1.8 1 23 405 428 405 428 0.96 6 19 0.35 37 6.1 1.6 1 23 434 457 434 457 0.87 7 19 1.7e-07 1.8e-05 25.9 2.7 1 23 464 487 464 487 0.98 8 19 0.024 2.5 9.8 3.1 2 23 494 515 493 515 0.96 9 19 1.2e-06 0.00013 23.3 1.0 1 23 521 543 521 543 0.99 10 19 0.00017 0.018 16.5 2.1 1 23 549 571 549 572 0.95 11 19 0.053 5.7 8.6 0.3 2 23 737 759 736 759 0.94 12 19 0.00078 0.083 14.4 0.1 1 23 782 804 782 804 0.98 13 19 0.0001 0.011 17.2 0.2 1 23 808 831 808 831 0.97 14 19 0.0032 0.34 12.5 1.7 1 23 836 859 836 859 0.96 15 19 0.16 17 7.1 2.5 1 23 865 888 865 888 0.90 16 19 5e-05 0.0053 18.2 5.1 2 23 896 918 895 918 0.95 17 19 0.0041 0.44 12.1 3.7 1 23 924 946 924 946 0.97 18 19 1.9e-06 0.00021 22.6 0.5 1 23 952 974 952 974 0.99 19 19 5.2e-05 0.0055 18.1 0.6 1 23 980 1003 980 1003 0.97
Sequence Information
- Coding Sequence
- atggaaatagaaaatcaaaacaacGTGACATACGGGCAGTGTCGTTTCTGTTTAGCTCGCGGTCATCACCGAGATTCTATAAACGAATACTATTTTAACGGTATACGCGAAGTgtacagtgaaatatttttcgaaacttttaattacataCTCTCAAACAACACAGAGTTGACAAAACTAATATGTTCAACATGTATACATCGATTGCGCGATGCAACCAGCTTCCGAATGATGGCAGTAAGCACAGAGCGACAACTTCTGGAAACGATAAGCATAGAGAATAGGAAAAAAACTGAATTTGTCAATGTTCTGGACGAGGATAACTTGGAAAGCCAAGATAATGTGAACACGGAATCACAGCAGGCTCTGAAGCAGGAAACTGTTGAATGTCGTGCTGCACTTGAAACTGCAGAGTATGGTCCAGATATCAGCGATTACTTGTCGGAGAATGAGTGCGAGGAGAGCTATGACAGTTTAGTGGAGGGCGAGGCAGCACTCCTGGAGAAGTGCAAAGATCCCCAGCCACTTCCCAGCAGGGCTTCGTTGCATACTATGTGCCCCGAGTTCTGCAGGCAACTTCTATCATTTAAAGATGCAAAAATACTTCCACAGACAATATCCAGACTAGTAGAAGATTACGAACTCGTCCGAGAGACTAGAATCGTTCGCCGCCAATGCATCACAGAAAAACTAGCCCATATAGTCAACACGACCACTGTTCTAGAATGTTCTAACGTCACTCCATTCAGAAGCAAGAGTCGGCAAGGGTTCCCCTGCTTCTACTGCAGACATATATTTGAAAGTCTCGACACACTCAAAGAACATACCGCTCAGCACAAGACACAAGAAATACTCAAAGTGCTGAGAACTTATGGAGCTGAATCATTAGTGGTATACGTAGATATAACAGatctaaaatgtaaaatatgtaaccATGACATGCCAAATCTGAACGAATTAAAGCATCATCTAATTAATGTGcataaaaagaaaatgcatTTAGAGTTTACGGACAGAATTATTCCCTACAAGTTATGTGACAGCGGTGTCTTTGAATGTCAAATGTGTGGATTCAACTACGAAACTTTTGGAGCCATTGAGCGTCATATGAACGTGCATTTTAGGAACTATGTATGCAAAGATTGTGGTACAGGGTTTGTCACGAGATACAGACTTAAAGTACATATGAAAAGTATGCACACAGACGGGACACACCCTTGCGAAGTTTGCGGCAAAATATTCTCCACACCTCAGAAGCATAAGAACCATGTCAACACAGTTCATAAATTGATGAAAAGATTCAAATGCACTAAATGTCCTGAACGTTTTGGTGAATACTTCAGAAGACAGAAACATATGGTACAAGTACATGGATTGGCACCGCTGAGGTACAAATGTAACGTTTGTGACAAAAGTTTTGACAGGCGATATACTTTATCCAGGCACATGAAGCGTGATCATTTGGAGGAGCGGGATAATCAATGCGAATTATGTTCTTATAAATGTTTTACGAAGAATGAGTTAAGAGTTCATATGGTGAAGCATAATGGAGAGCGTATTTACGAATGTTCTGTGTGTAAGAAGGCATATGCTAGGAAGAAGACGTTGAAAGAACATATGCGAATACACAACAATGATAGAAGGTTTGCCTGTGCGGTGTGCGGACAAGCGTTTGTGCAGAAATGCAGTCTCAAAGGCCATTTGAAGACTCATCATCTTGAATTTAATTACGTGTCGGAAAATGAGAGTGAGGACAGTGATGACAGTCTAGTAGAGGGTGAGGCAGCACTTCTGAAGAGGTTCAAGAATCCCAAACCACTACCCACCAGGGCCTCGTTGCCGACTGTATGCCCTGAGTTCTGCAAGCAACTATCATCTTTTAAAGATGAAAAAATGCTACCACAGACAATATCCAGATTAGTAGAAGATTACGAAATCATCCAAGAGACCAGAACCGACAGCCAAAGACGCATCACAGAAAAACTAGCCCATATAGTCAATGCTACAGCTGTTATAGAGTGTTCTAACGTGACTCCATTCAGAAGTAAGGGGCGGCAAGGGTTCCCTTGCTTCTACTGCAGACACCTATATGAAAGTGTCGACAGACTTAAAGAGCATACCGTTCAACACAAAACACAAGAAATAAACAGAGTCCTTAGAAATTACGGTGCTGAATCCTTAGTAGTATACGTAGACATAACTGAACTAAAGTGTAACATATGTGACCAGGGTATGCCAAATCTAAACGAATTAAAGCATCACTTAATTAATGTgcatgaaaagaaaatacatttagaGTTTACGGACAGAATTATTCCTTTCAAATTATGTGACAGCGGTATATTTGAGTGTCAATTGTGTGGATTTAGCTATGAAACATTTGGAGCAATTGAGCGCCATATGAACGTGCATTTTAAGAACTATGTATGCAAAGATTGTGGTACAGGTTTCATCACGATGTACAGACTCAAAGCACATGTGAAAAGTATACACAAAGATGGGACGTACCCTTGTAAACTTTGCGACAAAATATTCTCCACACCTCAGAAGCACAAAAGCCATGTCAACACAGTTCATAAAATGATGAAAAGATTCAAATGCACTAAATGTCCTGAACGTTTTAGGGAATTCTTTAGAAGACAAAAACACATGGTACAAGTACATGGATTGGCACCGCAGGGTTGCAAATGTTATGTTTGTGACAAGAGTTTTGACAGGCGGTTTACTTTATCCAGGCATATGAAACGGGACCACTTTGAGGAGCGGGATTATCAATGCGAATTATGTTCTTATAAATGTTTTACGAAGAATGAGTTAAGAGTTCACATGGTGAAGCATAATGGAGAGCGTATTTACGAATGTTCTGTGTGTAAGAAGGCATATGCTAGGAAAAAGACTCTGATAGAACATATGCGAATACACAACAATGATAGGAGGTTTGCCTGTGCGGTATGCGGACAAGCGTTTGTGCAGAAGTGCAGTCTTATAAACCATTTGAAGACTAATCATCTAGAATTTAACATGTAA
- Protein Sequence
- MEIENQNNVTYGQCRFCLARGHHRDSINEYYFNGIREVYSEIFFETFNYILSNNTELTKLICSTCIHRLRDATSFRMMAVSTERQLLETISIENRKKTEFVNVLDEDNLESQDNVNTESQQALKQETVECRAALETAEYGPDISDYLSENECEESYDSLVEGEAALLEKCKDPQPLPSRASLHTMCPEFCRQLLSFKDAKILPQTISRLVEDYELVRETRIVRRQCITEKLAHIVNTTTVLECSNVTPFRSKSRQGFPCFYCRHIFESLDTLKEHTAQHKTQEILKVLRTYGAESLVVYVDITDLKCKICNHDMPNLNELKHHLINVHKKKMHLEFTDRIIPYKLCDSGVFECQMCGFNYETFGAIERHMNVHFRNYVCKDCGTGFVTRYRLKVHMKSMHTDGTHPCEVCGKIFSTPQKHKNHVNTVHKLMKRFKCTKCPERFGEYFRRQKHMVQVHGLAPLRYKCNVCDKSFDRRYTLSRHMKRDHLEERDNQCELCSYKCFTKNELRVHMVKHNGERIYECSVCKKAYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHLKTHHLEFNYVSENESEDSDDSLVEGEAALLKRFKNPKPLPTRASLPTVCPEFCKQLSSFKDEKMLPQTISRLVEDYEIIQETRTDSQRRITEKLAHIVNATAVIECSNVTPFRSKGRQGFPCFYCRHLYESVDRLKEHTVQHKTQEINRVLRNYGAESLVVYVDITELKCNICDQGMPNLNELKHHLINVHEKKIHLEFTDRIIPFKLCDSGIFECQLCGFSYETFGAIERHMNVHFKNYVCKDCGTGFITMYRLKAHVKSIHKDGTYPCKLCDKIFSTPQKHKSHVNTVHKMMKRFKCTKCPERFREFFRRQKHMVQVHGLAPQGCKCYVCDKSFDRRFTLSRHMKRDHFEERDYQCELCSYKCFTKNELRVHMVKHNGERIYECSVCKKAYARKKTLIEHMRIHNNDRRFACAVCGQAFVQKCSLINHLKTNHLEFNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -