Hscr030796.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438993.1:2155389-2164465[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 5.2 5.5e+02 2.4 0.1 3 23 76 98 75 98 0.88 2 24 0.00041 0.044 15.3 0.7 1 23 104 126 104 126 0.98 3 24 0.01 1.1 10.9 2.5 1 23 132 155 132 155 0.94 4 24 0.29 31 6.3 5.2 2 23 164 186 163 186 0.96 5 24 0.00065 0.07 14.7 0.1 3 23 201 221 200 221 0.98 6 24 0.0017 0.18 13.3 1.7 1 23 227 249 227 249 0.97 7 24 0.00058 0.061 14.8 0.3 1 21 255 275 255 276 0.94 8 24 0.00058 0.061 14.8 0.3 1 21 283 303 283 304 0.94 9 24 0.00058 0.061 14.8 0.3 1 21 311 331 311 332 0.94 10 24 0.00058 0.061 14.8 0.3 1 21 339 359 339 360 0.94 11 24 0.00058 0.061 14.8 0.3 1 21 367 387 367 388 0.94 12 24 0.00058 0.061 14.8 0.3 1 21 395 415 395 416 0.94 13 24 0.00058 0.061 14.8 0.3 1 21 423 443 423 444 0.94 14 24 0.00058 0.061 14.8 0.3 1 21 451 471 451 472 0.94 15 24 0.00058 0.061 14.8 0.3 1 21 479 499 479 500 0.94 16 24 0.00058 0.061 14.8 0.3 1 21 507 527 507 528 0.94 17 24 0.00058 0.061 14.8 0.3 1 21 535 555 535 556 0.94 18 24 0.00058 0.061 14.8 0.3 1 21 563 583 563 584 0.94 19 24 0.00058 0.061 14.8 0.3 1 21 591 611 591 612 0.94 20 24 0.00058 0.061 14.8 0.3 1 21 619 639 619 640 0.94 21 24 0.00058 0.061 14.8 0.3 1 21 647 667 647 668 0.94 22 24 0.00058 0.061 14.8 0.3 1 21 675 695 675 696 0.94 23 24 0.00058 0.061 14.8 0.3 1 21 703 723 703 724 0.94 24 24 0.00042 0.045 15.2 0.4 1 22 731 752 731 752 0.94
Sequence Information
- Coding Sequence
- ATGGGCCGGCCAATCAAGGCAAGCCCTCCGGTCAACAGGTTCTCAGCGTACCCTCCTAGAGCCACTAGTTGGGTCGTTGATGAGCACCTGTTGATTACGGAACGCGAGAGGGTGGCTAGTCCTCTCTCACCGGCGGCAGCAATAATGCCTGTCCCTCGCGCTTATGTATCAGTTTCTGATATAATGAGGCATGGTTTTAGAGTCCATAGCGGGATCAAATTACTTTGTGCTTACAAGTGTGGGTTCAGCTCAGCGTACACAGGAGCTTTGAAGGAACATGAGGACCGAGTACACAAGAATGTGTATAAGTACACTTGTGATAAATGCGGCAAAGGTTTCCAAGTGAAGACCTGGTACGATCAGCATCAGAACATACACACTGGATTGAAGCCCTTCGTCTGTGATATTTGTGGTCACGCCTTTCATATGGAAAAgtATTTAACAACACATCGAGGAAAAATGCATCCGGAATCAGACGCAAAACGGCTTGTATGCGTACATTGTAATCTAAAGTGCGAAAATGAGAACACACTTCACACACATTTAAAgACTGAGCATGGAGTAACAAGAAAAGAACCAGGCCAGAGGAAAAAGGCGCTATGTGACTTGTGTGGGAAGATTTTGAACAGACCTGAGGAGTTGGTGCTTCACCGGAGGATGCATTTAGGACAGAAACCTTACAAGTGCAGTGTATGTAACAAGTTGTTCTCGCGCAAGTGGTCCGCGCACGTGCACGAGCGCGCGCACACGAGCACGGCTCTGCACGCCTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAACATCGACAGTCCACCGCTACACGCGTGCGCGCTGTGCGAGCGGCGCTACTCGCAGCCCAGCGCGCTCTACCGACACCAGAGGAAGTGA
- Protein Sequence
- MGRPIKASPPVNRFSAYPPRATSWVVDEHLLITERERVASPLSPAAAIMPVPRAYVSVSDIMRHGFRVHSGIKLLCAYKCGFSSAYTGALKEHEDRVHKNVYKYTCDKCGKGFQVKTWYDQHQNIHTGLKPFVCDICGHAFHMEKYLTTHRGKMHPESDAKRLVCVHCNLKCENENTLHTHLKTEHGVTRKEPGQRKKALCDLCGKILNRPEELVLHRRMHLGQKPYKCSVCNKLFSRKWSAHVHERAHTSTALHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRNIDSPPLHACALCERRYSQPSALYRHQRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -