Basic Information

Insect: Hypercompe scribonia
Gene Symbol: SMPD1
Assembly: GCA_949316085.1
Location: OX438977.1:1750098-1759927[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-07 4.6e-05 24.1 0.0 8 40 614 644 613 649 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-07	4.6e-05	24.1	0.0	8	40	614	644	613	649	0.87

Sequence Information

Coding Sequence: ATGATGAGGGTGTTATATTTAGTGATAACGTTTTTGGCTTCGGCATTTGCTTTACAACTTCCGACAGCAGATAGCATAGAAAAACTAATTAGAGCGAACGTAAAACATGAGTTAACAGAAACCGAAACTCGAgagattaaaaaagttttaaattttcttcgtACGCCAAAACAAAACCCTGAACCTTCGAGCGACGCATTTGTAGACTCGAGTATCGATTGCCTAGTATGTCAGAGTGCATTTAATGCTGTATTCCACGGCGTCAGGAATGGCCAAACCGACAAAGAAGTAACTGATGTGATCGTCAGTCTCTGCATAAATCTCAACATTCAGAACAAACACATTTGCGATGGAGCTGTTTCACTAAACATCccaATTATCACACACATCATCAGAACTACGCCCGCAGCCACACCGAGAGCATTCTGTGGACATGTGTTGCAAAATGGTAACAACCCAAATTTCTGTAGAGTCACCGATCCCAGATTTGAATGGCAAGTTGATCTACCACCACCAGCGACACCAAGCAACCCACCTCCAGTTGACACGAAACCGCTGAAAATTGCCTTCATTACGGATGCTCATATTGATCCTCTTTACGAAGCTTTCGGTGTAGCCGAGTGCGGTGAACCAACATGTTGCAGAAAGGGTCAGTCCTTGCCGCAGTCGACAGTTGGTAGACCTGCACCGGCAGGATACTGGGGAGATTATAGGAACTGTGATACTCCTATTTGGGCATACGACGATCTTATTGACCGAGTTGTAGAGACGCATAAGGATATAGATGTGGTATATTACGTCGGAGACACCATCGATCACTTTGTCTGGGAAACAACATACGAATTAATCAACGATGTGAACCGCCACCTCATTCAAAAAATGAGATCCAGTTTCGGCGATAAAGTCTTGGTTATACCCACACTTGGCAACCACGAATCACAACCCACGAAccaatttgcTCCATCGTCAGTCAAAGGACAATACATCAACACAACTTGGCTTTATGACGCACTTGCCGAGAAATGGGACCACTATCTAACTGAAGAAGCAAAAATCAATTTGAAGGACCGTGGAGAATTCTCTGTATTGGTACGACCTGGACTAAGGGTtatttccttaaataacaaTGTGGCTTTTACATCTAATTGGTGGTTGGCTTACGATCCTCTTGATGCGAAGAGACATTTAGATTGGTTGGTTAGTGAACTGGCGAAAGCTGAACGAGCTGGAGAGAAGGTTCATATAGTTACTCACGTTCCTCCTGGAGCTCGTGACTTGACTTTCACCTGGTCTAGGGAATACAACAGGATTGTCAACAGATTTAGCGCAACAATCGCAGCCGAATTCAATGGACACTCTCACGCTGATCAATTCAGGGTCTTCGAAAATCCACAAGGCAAGCCTATAAACGTAGCATGGGGTGGCGGTAGCGCCACCGCTTATACATTCTACAATCTTAACTACAAAATCGTTGAAATCAATCCTGCCACTTATGCGCCTGAAAACATCGAAACATACGTCTATAATCTCACCGAAGCAAATCTTACACCGAACGTAAGACCTCATTGGTTCAAACTCTacgatatgaaaaatacttactCACTCCCTGACTTATCAGCCGAATCTATGTACAATTTAGTTCGGAGAATGGTTACTACCGAGACACATTTGCTTAGTACTTACGCTGCATTCCACTTTAAATTGAGTGATTACCGTGTACCACATTGCCACTTGGACTGCAAGCTAAATCAAATGTGTACCATAGTGACGACTGTTCTGTGGGACAGGCGACGATGTGATGAAATCCGACGGCTGCATGCTCAGTATTCGAACCCTAATGCTTTGAAAGCTGTCGACACAGGTGTTTCACTGAGAAAAGCTGCTGCTGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACCGAAGAACAAAAAATAGTTGACTGGATTCTTTTTAGAGCGCAGCGTGGTTTACCAGTAACTAAAACagagctcttagattctattcaacaatttgtgaaaatgtcaaaaaaagaaaCTCCGTTTATTGATAGTCGGCCGAGCCGACATAGGTATGAGGGCTTTCGAAAACGACATCCTCAAATGTCAATCAGGAAACCACAACATCTTACTCATAGTAGAGCAGCAGTGACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCTAAgtatttaacagaaaaaaactTAATGGAGATTCCTTCTATGAGAATTTTCAACTGTGACGAGACTTATGTAAGTTTATGCCCTCCATCTGAAAAAGTATTGTTAGCTAAAGGATCCCGTTCAGCATATAAGGTGGTTGATTCTGATAAAGAAGGatttactgttttgtttatgtatagtGCTAATGGTGATCGTGCACCTCCCATGATCATGTTTCCTTACAAAGAAGAAGTACCAgagaaaattgtcaaaaattgTCCTGAAGGTTGGGGTGTTGGGCTTTCAGATAATGGGTGGATGACCTCTGAGTCATTCTATgagtatataacaaatatattttatccatGGCTAGTGAAACAAGGAactcagaaaaagaaaatgatcggcaaataa
Protein Sequence: MMRVLYLVITFLASAFALQLPTADSIEKLIRANVKHELTETETREIKKVLNFLRTPKQNPEPSSDAFVDSSIDCLVCQSAFNAVFHGVRNGQTDKEVTDVIVSLCINLNIQNKHICDGAVSLNIPIITHIIRTTPAATPRAFCGHVLQNGNNPNFCRVTDPRFEWQVDLPPPATPSNPPPVDTKPLKIAFITDAHIDPLYEAFGVAECGEPTCCRKGQSLPQSTVGRPAPAGYWGDYRNCDTPIWAYDDLIDRVVETHKDIDVVYYVGDTIDHFVWETTYELINDVNRHLIQKMRSSFGDKVLVIPTLGNHESQPTNQFAPSSVKGQYINTTWLYDALAEKWDHYLTEEAKINLKDRGEFSVLVRPGLRVISLNNNVAFTSNWWLAYDPLDAKRHLDWLVSELAKAERAGEKVHIVTHVPPGARDLTFTWSREYNRIVNRFSATIAAEFNGHSHADQFRVFENPQGKPINVAWGGGSATAYTFYNLNYKIVEINPATYAPENIETYVYNLTEANLTPNVRPHWFKLYDMKNTYSLPDLSAESMYNLVRRMVTTETHLLSTYAAFHFKLSDYRVPHCHLDCKLNQMCTIVTTVLWDRRRCDEIRRLHAQYSNPNALKAVDTGVSLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQQFVKMSKKETPFIDSRPSRHRYEGFRKRHPQMSIRKPQHLTHSRAAVTGDDLKDWFDEQAKYLTEKNLMEIPSMRIFNCDETYVSLCPPSEKVLLAKGSRSAYKVVDSDKEGFTVLFMYSANGDRAPPMIMFPYKEEVPEKIVKNCPEGWGVGLSDNGWMTSESFYEYITNIFYPWLVKQGTQKKKMIGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -