Basic Information

Insect: Hypena proboscidalis
Gene Symbol: -
Assembly: GCA_905147285.1
Location: LR990154.1:2432090-2454253[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0013 0.13 13.9 2.0 1 23 251 273 251 273 0.99

2 11 0.055 5.6 8.7 4.2 2 23 281 303 281 303 0.95

3 11 1.6 1.6e+02 4.1 1.0 1 23 307 329 307 329 0.96

4 11 0.0001 0.01 17.3 3.6 1 23 334 356 334 357 0.96

5 11 0.7 72 5.2 1.4 1 23 361 384 361 384 0.90

6 11 0.03 3 9.6 0.0 2 21 396 415 396 416 0.94

7 11 1.7 1.7e+02 4.0 1.2 3 23 465 486 463 486 0.95

8 11 0.0045 0.46 12.1 0.2 1 23 498 520 498 520 0.97

9 11 0.0096 0.99 11.1 5.1 1 23 526 548 526 548 0.92

10 11 7e-06 0.00071 21.0 2.1 1 23 553 575 553 575 0.97

11 11 1.4e-05 0.0015 20.0 1.1 1 23 580 603 580 603 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0013	0.13	13.9	2.0	1	23	251	273	251	273	0.99
2	11	0.055	5.6	8.7	4.2	2	23	281	303	281	303	0.95
3	11	1.6	1.6e+02	4.1	1.0	1	23	307	329	307	329	0.96
4	11	0.0001	0.01	17.3	3.6	1	23	334	356	334	357	0.96
5	11	0.7	72	5.2	1.4	1	23	361	384	361	384	0.90
6	11	0.03	3	9.6	0.0	2	21	396	415	396	416	0.94
7	11	1.7	1.7e+02	4.0	1.2	3	23	465	486	463	486	0.95
8	11	0.0045	0.46	12.1	0.2	1	23	498	520	498	520	0.97
9	11	0.0096	0.99	11.1	5.1	1	23	526	548	526	548	0.92
10	11	7e-06	0.00071	21.0	2.1	1	23	553	575	553	575	0.97
11	11	1.4e-05	0.0015	20.0	1.1	1	23	580	603	580	603	0.94

Sequence Information

Coding Sequence: ATGCAGTGTTGTGTGCCGAATTGTGCCTCAAATGAGCTAAAACCTAATAAATCTGATAATAGTGGATTGACCTTTCATGAGTTGCCTGAAGACTTCCAAACCACATCTCAGTTGCTGCAAGGCCTCCGATTGGAGGGTTGGAAGCCCCACACTAAAAGTTATGTATGCTCTCTACACTTAAGCAATGAAGACTTTGTGCAAACAGAGATGCGAGCCCTGAAAACTGATGTTGATGATGTTCCTGTCACTTTTGAAATGaattgcCTTGGGGATAGCCTCTCTCAGTATATCTGTTGGGAGTGTAAAGCTCGCTTAGCTTCGTTCGCGAGACTTCGCTCCGTAGCGCTGCGGAGTCTTGAACTACTTCAGGAGTTTTATGAAGATATTAACAATGGGGAGGACGAAGCTGCCAGTAAAAAATCAGATGAGTTAACATACAATTCAGAACTTGAAGATATGATCTACGATTCGGATAGCTCAAAATCTGAAAATGAAGATATTAATCGTAAACTGGATTCACATTTGGCGAAAATTAATAGCATGTATACCGATGCAAAACTTGGTCATATAAAACGAGGTATTGATATTGATTGTACAAGAATTAAAAAAGATCAAAATACTCTAAATgatataatatcaaaaaattataaagagtTAGATAAAACGTTTAGTATCAAACATTTATCAAAAGAAGAACAATTGAGAGAGATTGTACAAAGAAAGGAAtctgataattataaaaatgctgGATTTAAATGTGATGTTTGTTATAGAGGATTTGTACACGAAAAGGCATTTGAATTGCATCAAATGAAGCATACCGATGCCCACGGCCCAGCGAAATGCGCACTCTGTAGTGTACATTTTAAAACCTCAGCACTTATGAGGAGACACATAAAAGATTGTCATCAAAATAGGTACAGCTGTAACGCTTGTGAATATGTCACCGGGACATTACACAACGCAAAATTGCACGTGAAATTTCACAAGGGTACTACATATAAATGTTCACAGTGCGACAAAACATTCctaaaaaaaagttCCTTGCTGAGTCACGTCCGGATTCATCACCCATCGGGCTTTGTGTGTCGTCTATGCGGATTCTCCTTCCTGAACGAAAGGGGACTCCATCTACATACCGTGCGAACACATAAATTGGAGAAACAGgTACCAGAAGATGGTCCGCGCTGCGTTGAATGTGATATACAATTCAGTACTGACGCAGCATTGACTACTCATTATCAGGAATCGAACAAACATAAAGATATGTTTGCAGATAATGAAACAAGAAAGAGACCTTCTAGAGGCACTAAGCGGTTGTTCACAAAGCGGTTGCCCACAAAGCCGCTGTCCACAAAGCCTCGTAGAAAGAGAACTAAAGGACCCGTCAACTGTGAACTTTGCGACACGCAGCTTTCATCGTTTATGAAATATCGCTGGCACTTCAAGAAGTACCATCCGGACAAAGTACGGACTCTGTTCTCCGGCAAGTTCATGTGCGAGATGTGTGGGCTCGTCTGTATGagCCTAGCATTATTAGAAGCGCATAAAGACACGCACTCGGATATAAGGAACTATTCCTGTGAAGAATGCGGCAagcaatttaaaactaaacaaacaTTGTACTGTCATAAAGAAAAACATCTGGCAAAGAAATTCACTTGCGATATTTGTTCGAAGACTTTTACTTATTATTCTAATATGCAGAGACATAAGATTATTCACGAAAACCGGAAGTTCGATTGTAATATCTGCGGCAAGAGCTTTAATCATCCACAAAACAGACAAAACCATATTATTTACGTACATTTGAAAAAACCATTACCGGTACGccgaaatagaaaataa
Protein Sequence: MQCCVPNCASNELKPNKSDNSGLTFHELPEDFQTTSQLLQGLRLEGWKPHTKSYVCSLHLSNEDFVQTEMRALKTDVDDVPVTFEMNCLGDSLSQYICWECKARLASFARLRSVALRSLELLQEFYEDINNGEDEAASKKSDELTYNSELEDMIYDSDSSKSENEDINRKLDSHLAKINSMYTDAKLGHIKRGIDIDCTRIKKDQNTLNDIISKNYKELDKTFSIKHLSKEEQLREIVQRKESDNYKNAGFKCDVCYRGFVHEKAFELHQMKHTDAHGPAKCALCSVHFKTSALMRRHIKDCHQNRYSCNACEYVTGTLHNAKLHVKFHKGTTYKCSQCDKTFLKKSSLLSHVRIHHPSGFVCRLCGFSFLNERGLHLHTVRTHKLEKQVPEDGPRCVECDIQFSTDAALTTHYQESNKHKDMFADNETRKRPSRGTKRLFTKRLPTKPLSTKPRRKRTKGPVNCELCDTQLSSFMKYRWHFKKYHPDKVRTLFSGKFMCEMCGLVCMSLALLEAHKDTHSDIRNYSCEECGKQFKTKQTLYCHKEKHLAKKFTCDICSKTFTYYSNMQRHKIIHENRKFDCNICGKSFNHPQNRQNHIIYVHLKKPLPVRRNRK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00822025;
90% Identity: iTF_00822044;
80% Identity: iTF_00822044;