Hpro032733.2
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990152.1:1684980-1688229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.1 9.3e+02 1.7 0.2 1 17 74 90 74 91 0.88 2 19 0.0037 0.38 12.4 0.3 1 23 238 261 238 261 0.97 3 19 5.8e-06 0.00059 21.3 3.7 1 23 266 288 266 288 0.98 4 19 0.0094 0.96 11.1 0.2 1 23 318 341 318 341 0.96 5 19 1.4 1.5e+02 4.3 1.9 2 23 402 424 401 424 0.93 6 19 5.4e-05 0.0055 18.2 4.0 1 23 430 453 430 453 0.95 7 19 0.0045 0.46 12.2 0.3 2 21 457 476 457 477 0.94 8 19 0.034 3.5 9.4 0.2 3 23 487 508 485 508 0.91 9 19 6.5 6.6e+02 2.2 0.8 3 23 515 536 514 536 0.88 10 19 2.2 2.2e+02 3.7 0.1 2 23 549 570 549 570 0.95 11 19 0.28 29 6.5 3.6 1 23 576 598 576 598 0.91 12 19 7.1 7.2e+02 2.1 0.1 2 19 605 621 604 623 0.77 13 19 0.0017 0.17 13.5 1.6 1 23 634 656 634 656 0.97 14 19 8 8.2e+02 1.9 3.5 3 23 662 682 661 682 0.92 15 19 0.11 11 7.8 0.8 1 23 698 721 698 721 0.97 16 19 0.00015 0.015 16.8 0.2 1 23 727 749 727 749 0.97 17 19 0.0023 0.23 13.1 5.2 2 23 756 777 755 777 0.96 18 19 0.021 2.2 10.0 0.4 3 23 785 806 784 806 0.93 19 19 0.75 77 5.2 0.3 2 23 812 834 811 834 0.95
Sequence Information
- Coding Sequence
- ATGGATGAACCTGATCCAGACTATAACGAGTTTATGAAACATAAACTAAAATCACTATGTTTTGCGACAAAATTTTGCGGACTTTGCTTGCAAAGCGAAGGGGACCTTAATACAATGAACATGGAGTTCACGTTAAACAAGCAGGAGTTTTCTAAATGTCTACATGATATTCTGAATTACCTCGTTAATGATGACATTAAAAACCTGGCATCGAGTTCTTATGTATGCCAAACCTGTACTGAAAAAGCTATACAATCCTACAACttcataaacaatataaaagagATATCAAACATTATGGACAACTGTGTTTTAGATTTATCTACTAAAGTGAATGATATGCATACTCAATTTGATACTACACTTGAATGGGAAAATGCTAACGTGATGATCATTCTGGAAAGTGATAAAGATCTATATAATAGTATCAtaagtacaaataaaatagatatttttccAGTTATTACACCTCCTAtgattgtaaaaaaagtaattaatgtaCAGAAAATTGGAATAAAACCTCTAAATGTAaaggtacaaaaaaacaaaattaattcgcGAAGAAAATCTGCGAAAATAGATTCAACttctaataataaagaaataaatgtaGAGTCTAAAACTACAATCATTAAAGAcattaaatcaattatattGAATGAAAAGCCAAAAATTTCTTCAAAAAGGAAGAAAGAACAGGCTTCAGGAACATTCACATGTGTCGAGTGTAACGAACAATTCCGTACTAGCATAATACTAAGAAGACATGAAAGAgttgtacataacaaaaaagagtACCCATGCGAGCATTGTCAAAAAACGTTCTACAGTTGGAACTATTTGGTACGCCATTACAAGACTCACAGCCAAAGAAAATGCAAATTTTGCTGCAGAATTTTTCCAGTCAAAGAATTTATGCAGCATCTAAAGACAAAACACGAAGATTTGGTTTATCCGTGCCGGTTTTGTGACTTAGTTTATTACTCCGCTGATTCTTTAGTGACACATTTCCAAGTTAGTCATTTGGTTAATGCTAATGAAGTGGAATCTCAGTGTGCAATGTGCTTAAATAATATGAGTGAAGAGGCAAAGAAAACACACAAATGTCTTTATGGTTGCACAGAATGTTTTGAAATGCCATGCATACATTACAAGTATCTAGTGGCTTATAGAGAACAGACTTTGAATCATGGTAATCGGGTGAAATGCTGTGACTGTAATTACGTGACAAATGAGAAAAAATTCTTAATTGGTCATGTCAATCAAAAACATCTCGATCATCGTCCGTTCACTTGTGACCATTGTGGACAGCAGTTCTACACTAAATCAAAGTTAAGGTCTCATATCTCGTTGTTCCATCTCGATGCTAGATGCGAATACTGTGATTTAGTTTTCAATTACATCGACACCttagaaaaacacaaaaaacaatgCAAAAGTATTGTTAGAGCCTTTGGCTGCAATACATGTAATGCTTCATTTGATACCGTGGGAGAATTAACTAATCATGAGATTTTGAGACACACGGACAATGTATCTGCCTGCACGTATTGTAAAAGCAAGTTTCTCGATGATGAGGAACTAGCACAACACCACGAAAGAGAGCACGCTAACCTTCCAAGTCTTATAAACACAAAATACGCAGTATGCTCTCAATGTGacgtgaaattaaatactgtaaATGAAGTAATAGAACACCAGCAGTTGCACGGTCCAGGTGATGTATTCTTTTGTCATAAGTGTGATGAAAGTTTCGATGCTCTAATGAATCTGTACCTACACAATCTGCACCATAAGGTGAAAAGAACAAGTAGATGTAAGTACTGCAACGCATACTTTGCAGCTTCAAATTACTCGGAGCATGTGGTCCAGTgtccttataaaaaaaaagtattaaaacatGTGTGCGAAGTTTGTGGCAAAGGATTCCCTGTTAAATGTATTCTTACTAAACATTTACAAACCCACACAGAAAGAGGACCATGTCCAAAGtgtaagaaattaataaaacccCACTGTCTGCAGAAACATTTGGAGAAATGGCACGGTGCTCCCGTTGAAATTTTAAGGCAGCGAAataaaaggaattattataaatgtgaactGTGTGGAcacttaaatcaaaataaacctGACTTAGAAGCTCATATGAATCGCTATCATTTGAAAATCAAGCCGTATGCTTGCGATGTATGTGATAAAGCGTTCTGCAGTGCTGTTCGATTGAGGGACCATGTAGCGACACACACATCCAATAAGATGTGTTCTTGCTCTGTTTGTAGCAAGAGATTTGCTAATCCCGTGTGCTTGAAAATGCATTTTAGAACACATACTGGTGAATTGCCCAATGCTTGTGATATTTGTGGTGAACGATTTAGATCAGCGAGTATCATGAATACACATAAATTGAAAAAGCATGTGGGCAAAACTGTGAGTTGTCCGCTTTGTTATGCTTTGTTTTATGAGCGGGCTAATATGAGGACGCACTTTAAGAGAGTGCACTGGAAGTGTAAAGATAGGCCTTTTAATGTTAAAGAAGTGGAGGGGTTATCAGAAgaacattatcatttatttgaaGATCGGCGACTGCCGAAACTCGAGTGA
- Protein Sequence
- MDEPDPDYNEFMKHKLKSLCFATKFCGLCLQSEGDLNTMNMEFTLNKQEFSKCLHDILNYLVNDDIKNLASSSYVCQTCTEKAIQSYNFINNIKEISNIMDNCVLDLSTKVNDMHTQFDTTLEWENANVMIILESDKDLYNSIISTNKIDIFPVITPPMIVKKVINVQKIGIKPLNVKVQKNKINSRRKSAKIDSTSNNKEINVESKTTIIKDIKSIILNEKPKISSKRKKEQASGTFTCVECNEQFRTSIILRRHERVVHNKKEYPCEHCQKTFYSWNYLVRHYKTHSQRKCKFCCRIFPVKEFMQHLKTKHEDLVYPCRFCDLVYYSADSLVTHFQVSHLVNANEVESQCAMCLNNMSEEAKKTHKCLYGCTECFEMPCIHYKYLVAYREQTLNHGNRVKCCDCNYVTNEKKFLIGHVNQKHLDHRPFTCDHCGQQFYTKSKLRSHISLFHLDARCEYCDLVFNYIDTLEKHKKQCKSIVRAFGCNTCNASFDTVGELTNHEILRHTDNVSACTYCKSKFLDDEELAQHHEREHANLPSLINTKYAVCSQCDVKLNTVNEVIEHQQLHGPGDVFFCHKCDESFDALMNLYLHNLHHKVKRTSRCKYCNAYFAASNYSEHVVQCPYKKKVLKHVCEVCGKGFPVKCILTKHLQTHTERGPCPKCKKLIKPHCLQKHLEKWHGAPVEILRQRNKRNYYKCELCGHLNQNKPDLEAHMNRYHLKIKPYACDVCDKAFCSAVRLRDHVATHTSNKMCSCSVCSKRFANPVCLKMHFRTHTGELPNACDICGERFRSASIMNTHKLKKHVGKTVSCPLCYALFYERANMRTHFKRVHWKCKDRPFNVKEVEGLSEEHYHLFEDRRLPKLE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -