Hpro032731.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990152.1:1668685-1671757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.033 3.4 9.4 0.3 1 23 232 255 232 255 0.91 2 15 0.00066 0.067 14.8 4.3 1 23 260 282 260 282 0.98 3 15 0.003 0.31 12.7 0.4 1 23 312 335 312 335 0.95 4 15 0.0044 0.45 12.2 1.0 2 23 396 418 395 418 0.96 5 15 0.017 1.8 10.3 0.9 1 23 424 447 424 447 0.93 6 15 0.002 0.2 13.3 0.3 2 21 451 470 450 471 0.93 7 15 0.28 29 6.5 0.2 3 23 481 502 479 502 0.93 8 15 0.002 0.21 13.2 0.1 2 23 543 564 542 564 0.96 9 15 0.0038 0.39 12.4 2.7 1 23 570 592 570 592 0.97 10 15 0.011 1.1 10.9 1.7 1 23 628 650 628 650 0.95 11 15 0.02 2 10.1 0.1 3 23 656 676 655 676 0.93 12 15 0.0033 0.33 12.6 0.2 2 23 689 711 688 711 0.96 13 15 0.00019 0.02 16.5 0.8 1 23 717 739 717 739 0.98 14 15 0.0028 0.28 12.8 5.8 2 23 746 767 745 767 0.96 15 15 7.6e-05 0.0078 17.7 1.7 1 23 773 796 773 796 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAATCAGCCTTGGAGATGGACCCGGACAATTTAGACAGTTTAAAAAGCAAGCTGAAGGCAGTCTGGTCCTCACCTAAGTTTTGTGGCCTGTGCTTAGAAAGTAACGGAAACTTTTGCACTATAGAAATGGAATTGGTTATTAACAAGCAGAAATTCTCAAGATCTTTGCAGgatattgttaattttgtttttaacgaGGATattGAAAATGTCATGTCAAGTGGCTACCTATGCGATGCCTGCAcagaaaaaacaatacaatccTACCTATTCATTCACAACACAAAACAATTGTCAAGAATCATGAACAACTGCGTAACAGACTTATATTCCAAAGTTATAGACGTATATGATCAAGTCAATCAAACATCAGACTTTGAAAATGCCAACGTAATGATAGTGCTTGAGAGTGATACAGACCTATACAAGACTATTATAGACACAAAAATGACCGAAATTGTACCCACAGCAGCGCCTATTGCTATGAAGATAGAAAAAGTTGTTTCCCTCAAAAAAATAGAGCCTGAAACTGCTAAAGAGACTAAGAAAGTTGTAGAAgttaaagataaagaaaaaGATATAAAGCCTGTAGTAAGTCAAACTACTCCAAATATCTCTTTGAAAGGAGGCCATATTGTCATCAAACCTCTAAGTTACTTAAAGAACTCCTCTCCAAGATTCAATACATACAGCTGTATTGGTTGTCCAGAAATCTTCACGACATACAGGTCCTTAAAAGAGCACGAAAaagcaaaacataaaaaatcagTCTTCCATTGCAACTTATGCGATAAATCATACAATACTCGTCAGTACCTAGATATACATTACAAGACTCATGAGAAAGCAAAATGCAAGTTCTGCCAGCAGATTTTACCAGAGAAAGAATTAATGGAACATTTACGAGCTAATCATGCTTATTTGGTGTTCCCGTGTCAGTTCTGTGACTTAGTATATTACTCCCAAGATTCTTTGGTAACTCATTTTAATATTAGTCACTTAGTGAACAATATTAAAGCGAATTCTCAGTGCATAATGTGCTTGAAAAACTTCAGGGAAGGGCAGATTAAAGCCCACAAATGCAAGTATGCTTGCTCGGAATGTTTTGTTATGCCGTGCATACATTATAAATACTTGATGTCTTATAGAGAGCAAATGTTGAATCATGCTAACAAAGTGAAATGCATGGACTGTGATTATGTTACAAGGAGAAAAGAGCATTTCATTGGTCATGTTAACAGAGAACATCTTGACCATCATCCATTTACTTGTGCTGATTGTGCTCAACAATTCTATACTAAACTGAGTTTGAAGACTCATATAGTGCAATTCCATCAAGATCTTAATTGTGAATACTGTGATTTTGGATTCAAAGACAATAACAGTTTAGAAAACCATAAAAAGGCGTGTAAAACTGTCATCAGACCGTTTGGCTGCTATCAATGTAATGCATCATTTGATTTGGAGGAAGAATTGACTAATCATGAAAACTTGCGGCACAATGATAGTGTTCATGCTTgcaccttttgcaaaagcaggTTCTTAACCAATCTAGAGCTTAAAGAACACCACGCTAGAGTTCATGGAGGTATACAATGCAAGAAGCGAAGAAAGCATATAGAATGTTCTGTATGCGATATAATGTTCAAAACAGTGAAAGAATTGCTTCAACATGAAAAACTACATGATGCAGGTGAAGTTTATCCTTGCAAAATGTGTAAGAAGAAATTTTACAGTCTTATGAAGTTGTATGCGCATAGTCAACGACATTACACTGAAAGAATCAAGTGTAATCGTTGCAATAAGAAGATTGCAGCTTCTTTCTACCCACAGCATGCAGTTCGTTGTCCGTATAGACAAGAAGGATTCTTAGACCATATATGTGAAATTTGTGGCAAGGCTTTCCATCTGGAATCGTTACTCCGCTTTCATCTAAAAGTGCACCAGAACAAAGAACCTTGCCCGTTATGCGACAAGGTCATAAAACCAAACAGTCTTAAAAAACATATGGAGCAGGTTCACGGTCAAGAGAAAAAGGCACATAAAGTCCCTATAGTTGAATGTGAACTGTGTGGTCATGTTGTGAGAAAGAAACTTGATTTAGAAGCTCATATAAAccgatatcatttaaaaattaaaccatATGTTTGTAATGTATGTGGCAAAGATTTCTGTGGCAAAATTAGATTGAAAGAACACTTAGCAACGCATACTACGGACAATAGTTGTGTATGTTCTGTGTGCAATAAGAAATTTGCGAACCGTGTATGTTTGAAGATGCATTTCAGAATGCATACCGGAGAACTGCCCTATCCTTGCGACCTTTGTGGACAGAAGTTTAGATCGTCCAGTATGATGAAAACTCATAGATTAAAGAAACATTTGGAAAAGACTGTTTGTTGCCCGCTCTGTGATAGTATGTTTTTTATGGTGCGGGACATGAGGCATCATTTCAAAAAGGTGCATTGGAAGTTCAAAGATAGACCATTTGATGTTAGAAAAGTTGAAGAATTGTCTAAGgaacattatcatttatttgaaGATGGCAGATTGCCTAAGTTAGAATGA
- Protein Sequence
- MEESALEMDPDNLDSLKSKLKAVWSSPKFCGLCLESNGNFCTIEMELVINKQKFSRSLQDIVNFVFNEDIENVMSSGYLCDACTEKTIQSYLFIHNTKQLSRIMNNCVTDLYSKVIDVYDQVNQTSDFENANVMIVLESDTDLYKTIIDTKMTEIVPTAAPIAMKIEKVVSLKKIEPETAKETKKVVEVKDKEKDIKPVVSQTTPNISLKGGHIVIKPLSYLKNSSPRFNTYSCIGCPEIFTTYRSLKEHEKAKHKKSVFHCNLCDKSYNTRQYLDIHYKTHEKAKCKFCQQILPEKELMEHLRANHAYLVFPCQFCDLVYYSQDSLVTHFNISHLVNNIKANSQCIMCLKNFREGQIKAHKCKYACSECFVMPCIHYKYLMSYREQMLNHANKVKCMDCDYVTRRKEHFIGHVNREHLDHHPFTCADCAQQFYTKLSLKTHIVQFHQDLNCEYCDFGFKDNNSLENHKKACKTVIRPFGCYQCNASFDLEEELTNHENLRHNDSVHACTFCKSRFLTNLELKEHHARVHGGIQCKKRRKHIECSVCDIMFKTVKELLQHEKLHDAGEVYPCKMCKKKFYSLMKLYAHSQRHYTERIKCNRCNKKIAASFYPQHAVRCPYRQEGFLDHICEICGKAFHLESLLRFHLKVHQNKEPCPLCDKVIKPNSLKKHMEQVHGQEKKAHKVPIVECELCGHVVRKKLDLEAHINRYHLKIKPYVCNVCGKDFCGKIRLKEHLATHTTDNSCVCSVCNKKFANRVCLKMHFRMHTGELPYPCDLCGQKFRSSSMMKTHRLKKHLEKTVCCPLCDSMFFMVRDMRHHFKKVHWKFKDRPFDVRKVEELSKEHYHLFEDGRLPKLE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -