Basic Information

Insect: Hypena proboscidalis
Gene Symbol: -
Assembly: GCA_905147285.1
Location: LR990154.1:2283693-2300709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.3 30 6.4 4.2 1 23 410 432 410 432 0.98

2 10 0.059 6 8.6 2.0 2 23 440 462 439 462 0.94

3 10 0.58 59 5.5 4.7 1 23 466 488 466 488 0.97

4 10 6.6e-06 0.00068 21.1 2.1 1 23 493 515 493 516 0.96

5 10 0.0033 0.33 12.6 0.4 2 23 521 543 520 543 0.95

6 10 0.039 4 9.2 0.0 2 21 556 575 556 576 0.94

7 10 0.06 6.2 8.6 0.0 1 23 654 676 654 676 0.95

8 10 1e-05 0.0011 20.5 2.2 1 23 682 704 682 704 0.97

9 10 0.00042 0.043 15.4 0.3 3 23 711 731 709 731 0.95

10 10 1.8e-05 0.0018 19.7 2.5 1 23 736 759 736 759 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.3	30	6.4	4.2	1	23	410	432	410	432	0.98
2	10	0.059	6	8.6	2.0	2	23	440	462	439	462	0.94
3	10	0.58	59	5.5	4.7	1	23	466	488	466	488	0.97
4	10	6.6e-06	0.00068	21.1	2.1	1	23	493	515	493	516	0.96
5	10	0.0033	0.33	12.6	0.4	2	23	521	543	520	543	0.95
6	10	0.039	4	9.2	0.0	2	21	556	575	556	576	0.94
7	10	0.06	6.2	8.6	0.0	1	23	654	676	654	676	0.95
8	10	1e-05	0.0011	20.5	2.2	1	23	682	704	682	704	0.97
9	10	0.00042	0.043	15.4	0.3	3	23	711	731	709	731	0.95
10	10	1.8e-05	0.0018	19.7	2.5	1	23	736	759	736	759	0.95

Sequence Information

Coding Sequence: ATGCAGTGTTGTGTACCGAATTGTGGCTCAAAGGAGCTAAAACCTAAAAAATCTGAGAATTGTGGCATCACTTATCATGCGTTACCCAAAGACTCCCTAACCAGATCTCGGTGGATACAAGTCCTCAAATTGGGAGATTGGACGCCTGACTCTGGAAGTTATATATGCTCGCTACACCTTAACAATAAAGACTTTGTGCGACCAGAGCTGCGTGCACTGAAGAGTGTTGTTGAAGTGCCTGTGACATTTGAAATgGATTGCCTTGGGGATGTCTTACCAAAGCATATTTGCTGGGAGTGTAAAGCTCGCTTAGCTTCGTTCGCGAGACTTCGCTCCGTAGCGCTACGGAGTCTTGAACTACTTCAGgagatttataaaactgttaataGTCAGGAGACAACCCAAGATTCACAGTTGATTGTTGACAGAGATACAAATAATCTAGCATCTACCCTCATTCgcagtaatataaaaatagtagacTACCCTCCCAAAGGTGTGTTCGGTAAAAAACCTAATAATACTCTTAGCTTCAATCTTAGAAATAGAAATGATCATGATAAAAGCGCGAAAGTATCAATAATTTCAAGTAaaggaaaaaacaaaatagtgaAAAAggaaaatgataattttgactTCGGTGATGCAAATGATAATTTGAAACATCGCATAACtatatttaaagatttgaaccaagtgaaaaatgaaaatgatgaTTCTGACTTAAGTGATGTAAGTGATTATTCAGAAAATTGTACAAAAGTATCTAAACCTTGGCACAAAGGTAAAAATACTACGgaagtgaaaaatgaaaatgataatTCTGATACCGATGAtgtaaatgataattttgatcATCTCGAAGATGATAATATCGAAGACCTTAAAGATGAAACTGCGAGTCAAAAATCCGATGAAGTATACAATTCGGGGCTTGAAGATGTGATCTACGATTCCAATAGTTCCAAATCTGATAATGAAGATATTAATCGCAAAGTCGATTCACATTTGACAAAAATGAACAGCACgtttgacaataaaaaagtTTCTTTAATAATGCGAGGGATAAATATGGATTGTAATAGGATTAAAAAAGGGAAAAGTGATGGTAAATTGCAAAGTTCTAAAGAATTAGAAGAAACATTTAGCATTAAACATTTCACAAAAGAAGAACAACTAAAAGAATTTCAACAAAGAAAGGAATCTGACAATTATAAGAATGCCGGCTTCAAATGCGATGTGTGTTATAGAGGATTTTTACATGAAAAGACTTTTAAATCGCATCAGATAAAGCATACAAATGTTAACGGTGCAAATAAATGTGCACTCTGTGGCATCCATTTCAGAAAAATCACCAAGTTGAGAGCACATTTTAAGGAGTCGCATCAATATAGGTACAGCTGCAAGAAGTGCGATTACGTCACCTGTGCATTgAGCAAAACGAAATTACACATGAAATTTCACAAAGGAACCATTTATAATTGTTCACAGTGCGACAAGACATTTAAccaACAGAATTCGCTGCTCGGCCATATTAGGATACATCACACATCGGGCATTGTATGCAATTTGTGCGGCAACTCATTTGTGAACGAAAAAGGACTTCACAATCATAAATTGATGGTTCACAAACTGGACTCGTTGGAGGTACCAGAAGATGGTCCGCGCTGCGTTGAATGTGATATACAATTCAGTACTGACGCAGCATTGACTACTCATTATCAGGAATCGAACAAACATAAAGATATGTTGCCCGACAATGAATCAAGAAAGAGAAGTGCTCCCAGTGCCTCCAAGCCGGTGTACTGTCACGTGAATCCTCCCAAACCGAGAAAGCGCGGGAACAAGGGACCTGTCATCTGCGAACTTTGCGACACGCAGCTTCCAACGTTCTTGAAATATTACTGGCACTTCAAAAAGTACCATCCGGACAAAGTACGGACTCAGTACCCGGGGTCATATATGTGCGAGATCTGCGGAGTAGTCTTTTTGattcgAGCACAGTTGGAAGAACACAAAAACTTGCACTcggatataaaaaagtattcgtGCGAGGAGTGCGGCaagaaatttaaaactaaacaatcTTTGTATGTCCATAAAGAGAAACATTCGGAAAATAAAATGGCATGTGATATTTGTGGGAAAACCTTCGCTTATTTCAGAAATATGCTGAGACATAAGATTCTTCACGATGACCTGAAATTCGATTGTAACATCTGCGGAAAGAGTTTTAAGCACCCACAAAACAGACAAAGTCACATTAACTACACACATCTAAAAAAACCACTGCCGGTGCGGAAGGATAGAGTCAGggctaaaaaagaaaaaAAAGACTGCTGA
Protein Sequence: MQCCVPNCGSKELKPKKSENCGITYHALPKDSLTRSRWIQVLKLGDWTPDSGSYICSLHLNNKDFVRPELRALKSVVEVPVTFEMDCLGDVLPKHICWECKARLASFARLRSVALRSLELLQEIYKTVNSQETTQDSQLIVDRDTNNLASTLIRSNIKIVDYPPKGVFGKKPNNTLSFNLRNRNDHDKSAKVSIISSKGKNKIVKKENDNFDFGDANDNLKHRITIFKDLNQVKNENDDSDLSDVSDYSENCTKVSKPWHKGKNTTEVKNENDNSDTDDVNDNFDHLEDDNIEDLKDETASQKSDEVYNSGLEDVIYDSNSSKSDNEDINRKVDSHLTKMNSTFDNKKVSLIMRGINMDCNRIKKGKSDGKLQSSKELEETFSIKHFTKEEQLKEFQQRKESDNYKNAGFKCDVCYRGFLHEKTFKSHQIKHTNVNGANKCALCGIHFRKITKLRAHFKESHQYRYSCKKCDYVTCALSKTKLHMKFHKGTIYNCSQCDKTFNQQNSLLGHIRIHHTSGIVCNLCGNSFVNEKGLHNHKLMVHKLDSLEVPEDGPRCVECDIQFSTDAALTTHYQESNKHKDMLPDNESRKRSAPSASKPVYCHVNPPKPRKRGNKGPVICELCDTQLPTFLKYYWHFKKYHPDKVRTQYPGSYMCEICGVVFLIRAQLEEHKNLHSDIKKYSCEECGKKFKTKQSLYVHKEKHSENKMACDICGKTFAYFRNMLRHKILHDDLKFDCNICGKSFKHPQNRQSHINYTHLKKPLPVRKDRVRAKKEKKDC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00821997;
90% Identity: iTF_00821997;
80% Identity: iTF_00821997;