Hpro035171.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:4202372-4205360[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2 4.3e+02 2.8 2.2 1 23 58 81 58 81 0.93 2 11 0.0095 0.97 11.1 2.2 1 23 192 215 192 215 0.93 3 11 0.00054 0.056 15.0 0.2 2 23 241 263 240 263 0.95 4 11 0.0098 1 11.1 2.8 2 23 286 307 286 307 0.98 5 11 0.00084 0.086 14.4 0.0 1 23 311 334 311 334 0.96 6 11 2.8 2.9e+02 3.3 0.7 1 21 339 359 339 362 0.72 7 11 0.12 13 7.6 1.1 1 23 369 392 369 392 0.83 8 11 0.00043 0.044 15.4 1.2 2 23 400 422 400 422 0.96 9 11 0.0004 0.041 15.5 2.4 1 23 428 450 428 450 0.98 10 11 3.3e-06 0.00034 22.0 2.6 1 23 456 478 456 478 0.99 11 11 8.6e-05 0.0088 17.6 4.4 1 23 484 507 484 507 0.98
Sequence Information
- Coding Sequence
- ATGGAAAAACTTCCTTTGAGCGATGATGATTGCAGGAAAACACCTTCCGGGTCCAGAGCAATCGTACCTGAAGCAGTtagttataaagaaataaagaagcataaaattaatataaaagaaattatGCTTTGGTCCAACGCCACGCCCATCAGACGTCTTGAAGACATGGGTTACATGTGTTGCTACTGTAAAGATTATTACCAGGAACCTGCTGACTTAAAACAGCACACATTACAAAATCATACAGATATCAAAACTGCTGTGTTCATGAAAATGCCCCTTGAATGGTTCGTTGTAAGATTAGATATTACTTCACTGAAGCGTAACATCTGTGGTATTGATATAGACTCTCTGGATGAACTGATAGCCCATTTAATTAgtCCACCAGCAAAAAAGgttaagaaagaaaaaaatcgaTCAACGGAAGCTAATAGCGCAGTAACTTCAGGATTCAAACGAGCTCCTGACAGATTTAATGGTAATAGAAAGGAACTTAATAAGCATCGAAATAATGTAGAGCAGATCATGCTCTGGTCTAACGCTACACCCATTAGACGCATCGAAGATATGGGCTACATGTGTTCTTTCTGTGAAAATCACTATAAAAACGCTGCGGATTTAAAGAAACACACGTCAGAATCTCACCAAAATATCAATAAAGCTGCTTTCATGGGTTTAAGCGTTGATTGTTTTATAGTGAGGGTAGATATTACTTCATTGCGGTGCAAAATCTGTGATCGAAGTATCGATTCTCTTGACCAATTGATACAACATCTAAAAAATGACCATCAGAAAACTCTTTACACTGATATAAAAAATCGTATCACCCCATTAAAGATAGAAACAGAAACTCCTCAATGTTGTATATGTATGAAAGGTTtcagcaaatacaaattactcctAGAACATATGAATACTCATTACAGAAATTATATTTGTAGTGAATGTGATGTTGGTTATGTAAGTCCCAACGGGCTCAAGGCTCATAGGAAGAACATACACATAAAAGGCGAGTTTAAATGTGATTACTGTCCACACATTTCGGACACGTTACCTAAAAAGAAAGGACATGAAAGAGCAGCGCACACGCGTAAAGCTTGCTTATACAAATGTGGATATTGTAACGAGACCTTTGGTGAATATAGGTTTAAAGAGGAACATTTGATAATGAAGCACGGTTTAAAAGTGCCTACAGCTACGTGTCACGCGTGTGATAAAGTTTTTAACAGTAGAAACGCGTTGAGTATTCACGTCAAGAGAGATCATTTACTAGAGAGAACACATAAATGTGAAGAGTGTGAGATGAGTTTTTACGCGACAAAGGATCTAAAAAACCATATGCTGAAGCATACTAagataaaattgttcaaatgcACGGTTTGTGAGAAGGCTTTTGGAAGACGGCATACTCTGAAAGAACAtatgaaaatacataataatgtaagaCGTTTTAAATGTGAGCATTGCGGGCAAGCATTTATTCAAAAGTGCAGCTGGAAAGGACACATGAGGTCCAAACATGATGAATTCGTCTAA
- Protein Sequence
- MEKLPLSDDDCRKTPSGSRAIVPEAVSYKEIKKHKINIKEIMLWSNATPIRRLEDMGYMCCYCKDYYQEPADLKQHTLQNHTDIKTAVFMKMPLEWFVVRLDITSLKRNICGIDIDSLDELIAHLISPPAKKVKKEKNRSTEANSAVTSGFKRAPDRFNGNRKELNKHRNNVEQIMLWSNATPIRRIEDMGYMCSFCENHYKNAADLKKHTSESHQNINKAAFMGLSVDCFIVRVDITSLRCKICDRSIDSLDQLIQHLKNDHQKTLYTDIKNRITPLKIETETPQCCICMKGFSKYKLLLEHMNTHYRNYICSECDVGYVSPNGLKAHRKNIHIKGEFKCDYCPHISDTLPKKKGHERAAHTRKACLYKCGYCNETFGEYRFKEEHLIMKHGLKVPTATCHACDKVFNSRNALSIHVKRDHLLERTHKCEECEMSFYATKDLKNHMLKHTKIKLFKCTVCEKAFGRRHTLKEHMKIHNNVRRFKCEHCGQAFIQKCSWKGHMRSKHDEFV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -