Hpro017107.2
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990137.1:3831914-3850894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0041 0.42 12.3 1.1 1 23 905 927 905 927 0.99 2 11 6.6 6.7e+02 2.2 9.4 1 23 934 957 934 957 0.95 3 11 0.0075 0.77 11.4 3.1 1 23 988 1011 988 1011 0.96 4 11 0.085 8.7 8.1 0.3 2 23 1020 1042 1019 1042 0.95 5 11 0.0092 0.94 11.2 0.1 2 20 1053 1071 1053 1073 0.95 6 11 1.2e-05 0.0012 20.2 1.1 3 23 1083 1103 1083 1104 0.96 7 11 2.6 2.6e+02 3.5 0.1 3 23 1120 1141 1119 1141 0.95 8 11 4.1e-05 0.0042 18.6 3.6 1 23 1157 1179 1157 1179 0.98 9 11 7.6e-05 0.0077 17.7 0.2 1 23 1185 1207 1185 1207 0.98 10 11 2e-05 0.0021 19.5 5.3 1 23 1213 1235 1213 1235 0.98 11 11 0.19 19 7.0 4.9 1 23 1241 1264 1241 1264 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTATTGAGTTTGGACGAAGATTTTAATAGAGTCAAAAAAGTGTTGCAAGATGCAAAggaatattctttttatttgctGAAGCTGCTAGAAACCTATGAAAAAGCTAACCAAGATTTCGAAAAGATATCTGATACGTTGAAAACATCACGGGCAATTTTCGATCTAGAACTTTCTAGAAATCAAGAAAAGTATAAGGTAGAGAGTAAATTAAGGGAAGGTGATATTCGGGGCGCCTCAAGACTACTGTTTAGTAGCGATATAGTGGCGCCTTGTTCTGCAGAAACACTCTCTGATCTGCAGAACAAGCACCCTGCACCAGTTGATGACCTCTCTTTTCCCGATGGACCCGACTCTAACATAAATATCTTATCTGTTTCAGCCAAGGAAGTTTCCTCAGCTGTCTGCTCCTTCCAGAGTGGCTCTGCCGGCGGTCTCGATGGGCTAACCCCACAGCATTTAAAAGATCTTTTAAGCTCGGGCGCCGGTGAAGCTGGTGATACCCTCTTGAAGGAGTTGACAGCTCTAACTAACCTTATGCTCTCCGGCAATGTGAACGAATGCATCATCGATGTTTTATACGGCGCTAACTTGTGCGCTTTGCGCAAGAAGGACGGTGGCATTCGTCCCATTGCCGTAGGGTGTACATACAGACGTATGGCAGCCAAAGTGTGCTGCAACCATTATCGTCAAGAATTATCGACTACATTCCAGCCCCTCCAACTCGGGTTCGGATCAAAGGGGGGCTGTGAGGCTGCCATACACGCCTTGTCCACTTACCTTGGCTGCGACAAAGGCGAGGTCATCTTAAAGGTAGATGTGAAAAACGCCTTCAACTCAGTGAATAGGGACACTCTGCTGACACAAGCAAAATTAGAAACacctaaaattttcagttttctttgGCAATGTTATAGACATCCATCAAAATTGCTTTATAAGGAAAATCTTTTGGAATCATCAGTAGGCTGTCAGCAGGGTGACCCTCTCGGACCTGTTCTTTTTAGTCTTGCTGTTAACCCCATTATTCGGCaactaaattcaaaattaaatatgtggtATTTAGACGATGGAACCCTGGGAGGTGACGCAGAAACAGGCCCAAAAGAAATAAATGACAACAAACTCAAGGACACTCCAAACATAATAGCCTCTGGGTTTTGTAATGTTGAAAGCCTTTGCCAGGCGGCCACTTCTGCTGAGCGATTTAAAAATGAATGGACTAATTTGTCCCTTAACATTGAGGAGGACTATAGCCTCACCTCAGAACCAAGCAAATTAAAAGGGTTGAGTTTGCTGAATTTTAAAACGGAACATCCAGTACAGTCAAAATCGTTTCAAGCAGCTTCTTTACGACAATTCAAGAAAGACTTATCGCACGCTTCACATGGTGAAATGGGCTTAgaagaaattaaagtaaatctGAAGAATGACGATAGCCTTTCTTCAGAACCAAGCAAGCTAAAGAAGTCAAATTCATGTAAACTCAAAACGGAAAACCCAATTCCACAAACATCTCCTCAAACGGCTCCTATGATTCAAGACATGAATAAAGCTTTGCATAATCCAAATGAAGAAATGTGTCGCATTGATAATAAAGTCAAATTCCTGATGGTGCGGAAGGTGTCGGAGCACAGCGTGCTTATCAAGTGGAGTCAACCAAGAGATCTAGCTGACGTCAAAGGATATGAGTTGCTGGTCGACGGACGTGCGGTGCAACACATTTTTAACCCATCCAAATGTCTGGCCGTGGTCACATGCCTGCCCCACACAGACAAGATACTCTTGACTATTCGCACTATTTCCTGTGTTGACTCAAAATTTGATCAATTTCCATCATCCACTATTATCTGTGATAAAAATCAACATGTATGCTTTGAATGTGCTACGCTACTGCAAAAGTATCAGGGTTTCAAGTCCAAGTGCCTTAGAGCTCATGATTTATTATCTCAAATCACTGTTCATTCTACTGAGATAACAAAAcaagtactgcaaaatatagacagaaaagaaaataagttGGAATCCAATTTGATAATCTCTACAATAAAGACAGACTACGATGAACCAAGAAATGAAGAtagtaatttaacattaaaagaaGATGGAAAACCTCATCAAACAGAAGCTGAAATAAAAACAGAGATGAAAAACATTGAAACatacaatgaaaataatttgaataaagattCTCATAAAGAAATCAATAAAACAGTCTCTGATTTAGAAACAATATCTCCAAACACTtcaacagttaaaaaaaaagtcaaagaaCCGAAAActaaaaaacgaaaaatagaGTTGCAAACAGTTGATACTCTAGTTACtgaaactaaatttaatattaatgagtCTCTTGATGATTTAGGTAATGATAATGACTTTACAGTATACTCTGATGATAGTGTACATGAAGAAAAACCAGTATTGAAAACCAAACcaccaaaattaaaaagaaaaacaagtaTTCAAAAAGAACCAAAaacaagaaaaagaaaaattaaaactgtcGTCAAAAGTGACGATAACCTCAGTGATGATGAACCTTTATCGAAAAAAGCCATAGACAAAATTGTAGAACCTATTAAAAAGTTTGGAGTGGACATGGAGTTCTTCGATGACTATGCAACAGTTGTATTTCTTACACCTGATGAAGCTAGACAAGAGTTGTTATCAAGAAAGGAGTCAAGTAATTATAAGAGGTCCCCATTCAAGTGTGATTTCTGTTATAAAGGGTATGAGGCGAAGGCAGCATTTGAAAATCATATGAAGAAACATAGTGAGGAATATGGAGATTATGACTGTGATCTGTGCCACCTAAGGTTTCCCAAACACATTTACTTATGTAAACATAAGCTGTCCTgccataaaagaaaatttatctGCAAGCTATGCCCATACATTTGCTATTGCATGTACCAAGCCAGAACACATGTAAGTCTACATAAAGGGAAGAAATATCCATGTACACACTGCAACGAAATATTCAGTATGCCAAACAGTTTGATAATGCACAAACATAAGAAACATCTCAACGAGTTGTCTTTGGAGTGCGTATGTGAAATCTGTGGTGGTATTTTCGGATCAGCGAGAGGAttgtttttacataaaatgAAGTTACATAGAACGgaCAAAAACAGCAAACTGGGCCCTAAATGTGAAGATTGTGGTGTCCACTTCACGTCTGAAGTGGCCTGGAAGCGACATCTAGTTTTATCTTCTAAACACGCTACAAGCAACGGCTGTACATACTGCGGCGAAAGGTTCACAAGTGTTGAAGAGTTGAGAGCCCACATGAGATTGCATCACCCGCGCATCAAACGCCCTAGGAACCAGAAATATGTGTCCGCCGCCTGCGTGATTTGTAACAAATGGCTGTCGACTCGCTTGCAGTACAACGATCACATGGCATCAGAGCACCCACATTCCGACGAGGCCAAGCAAATAGAGGAAAATGACTTTAGTTTTGTGTGTGAAGTTTGTGGAAGAGCTTTTAAGCAACAATGTTTCCTAACGTACCACCAGCGCAAGCACACGGGCGAGCGTCCGTACAAATGCTCGGACTGCGGCAAGACCTTCCAGATGGCGGGCGCGCTGTCCATCCACCGCACCGTGCACCTGCGCACGCGCACGCACACGTGTCACTTGTGCAACAGAGTCTTCTCCTTCCAGAGCGCGCTTAATAAACATGTCAAGACACATCTCGGTATACGTCCTCACAAATGCGCGATATGTGACAAGGGGTTCCTTCACATGTGCGAGTTGAAACAACATATCAAATACGTACACGACAAAGTGCCTTGGCCTAAGAAGAAAAGCAAGCGAAACACTGTGGACGATAGTACACCGTATCCTGAGTTTAATTGA
- Protein Sequence
- MELLSLDEDFNRVKKVLQDAKEYSFYLLKLLETYEKANQDFEKISDTLKTSRAIFDLELSRNQEKYKVESKLREGDIRGASRLLFSSDIVAPCSAETLSDLQNKHPAPVDDLSFPDGPDSNINILSVSAKEVSSAVCSFQSGSAGGLDGLTPQHLKDLLSSGAGEAGDTLLKELTALTNLMLSGNVNECIIDVLYGANLCALRKKDGGIRPIAVGCTYRRMAAKVCCNHYRQELSTTFQPLQLGFGSKGGCEAAIHALSTYLGCDKGEVILKVDVKNAFNSVNRDTLLTQAKLETPKIFSFLWQCYRHPSKLLYKENLLESSVGCQQGDPLGPVLFSLAVNPIIRQLNSKLNMWYLDDGTLGGDAETGPKEINDNKLKDTPNIIASGFCNVESLCQAATSAERFKNEWTNLSLNIEEDYSLTSEPSKLKGLSLLNFKTEHPVQSKSFQAASLRQFKKDLSHASHGEMGLEEIKVNLKNDDSLSSEPSKLKKSNSCKLKTENPIPQTSPQTAPMIQDMNKALHNPNEEMCRIDNKVKFLMVRKVSEHSVLIKWSQPRDLADVKGYELLVDGRAVQHIFNPSKCLAVVTCLPHTDKILLTIRTISCVDSKFDQFPSSTIICDKNQHVCFECATLLQKYQGFKSKCLRAHDLLSQITVHSTEITKQVLQNIDRKENKLESNLIISTIKTDYDEPRNEDSNLTLKEDGKPHQTEAEIKTEMKNIETYNENNLNKDSHKEINKTVSDLETISPNTSTVKKKVKEPKTKKRKIELQTVDTLVTETKFNINESLDDLGNDNDFTVYSDDSVHEEKPVLKTKPPKLKRKTSIQKEPKTRKRKIKTVVKSDDNLSDDEPLSKKAIDKIVEPIKKFGVDMEFFDDYATVVFLTPDEARQELLSRKESSNYKRSPFKCDFCYKGYEAKAAFENHMKKHSEEYGDYDCDLCHLRFPKHIYLCKHKLSCHKRKFICKLCPYICYCMYQARTHVSLHKGKKYPCTHCNEIFSMPNSLIMHKHKKHLNELSLECVCEICGGIFGSARGLFLHKMKLHRTDKNSKLGPKCEDCGVHFTSEVAWKRHLVLSSKHATSNGCTYCGERFTSVEELRAHMRLHHPRIKRPRNQKYVSAACVICNKWLSTRLQYNDHMASEHPHSDEAKQIEENDFSFVCEVCGRAFKQQCFLTYHQRKHTGERPYKCSDCGKTFQMAGALSIHRTVHLRTRTHTCHLCNRVFSFQSALNKHVKTHLGIRPHKCAICDKGFLHMCELKQHIKYVHDKVPWPKKKSKRNTVDDSTPYPEFN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -