Hpro034106.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990154.1:856502-875045[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.026 16.1 0.9 1 23 353 375 353 375 0.98 2 11 0.98 1e+02 4.8 3.0 1 23 382 405 382 405 0.85 3 11 2.8 2.9e+02 3.3 0.5 1 23 409 431 409 431 0.92 4 11 0.0014 0.14 13.7 5.4 1 23 436 459 436 459 0.98 5 11 0.00045 0.047 15.3 0.1 2 23 464 486 463 486 0.95 6 11 0.17 17 7.2 1.2 3 21 500 518 499 523 0.92 7 11 0.74 76 5.2 0.4 2 23 554 576 553 576 0.95 8 11 0.0025 0.26 12.9 1.1 2 23 592 613 591 613 0.95 9 11 4.8e-06 0.00049 21.5 1.3 1 23 619 641 619 641 0.98 10 11 2.6e-06 0.00027 22.3 0.1 1 23 646 668 646 668 0.97 11 11 0.00011 0.011 17.3 4.1 1 23 673 696 673 696 0.95
Sequence Information
- Coding Sequence
- ATGAGTGCTGGTAAAAAGATTCGTATAAGTGTGAAGTGCTGCGTGAAGAATTGCAGCAATGAGACTAAAAAGATTAACAAGAGCCATGGAGTCACCTATCATTTATTCCCAAAAGAGAAGAATCTCCGCAACTCCTGGATCGCAGCGCTGGGCATGGAGGAGCCCAAGATCAAGAGTCTGGTCTGCTCACAGCACTTCAGAACTGAAGACTACTTTGTGAACAAGAGGGGGTTGAGACGGTTAAAGATGGGAGTGTTGCCCATGGCCACGCCTCTGGTTTGCAGAATGTGTTTGAGCACTAAAAGGAAGATGTACAACATGTCCAAACAGAATATTCTAGAACATTATGAGAAGCTCACTGCCACCAAGGGCAGCAAATCAGACGCGCTCCCCCACCACGTGTGCTGGGAGTGCAAGGCCCGCCTCTCCTCCTTCGCCAAGCTTCGCAGCGCTGCGCTGCGCAGTCTCAAACTGCTTCGCTCCTTCTACGATACTGTCACCAATAACATTGAGGCCTCCAAAGACGTATCACGAATAATAGACAAACATTCAAAAAAGCTATCGTCATCTCTCACCCGCACGCACTCAGAAGTGAACTACGCGGATTATCACTTCACATACACCGAGCCAATACCCAATTATGTAGATATCAACGTTACCGACGTCAAGACTGAACTAGGAGACGCTAATGACGTTGAATTTGATAACAATAAACCTGAATTTAATGATAACGACAAATCTGATGACAAAAACGATATATTTGACGCTGATAATGACAAAAACGATGTATTCGATGACAATGACAAACTTAACAATGTCACTGTCAACGCTGAACTGAAAGATGATGAtaattttgacagttttgacaGGAATGATCATTTTGACAGTTCGGACGATGACGACTGTTTGAAAACGatcaaagagaaaaaaatagaGGAGCAGAAATTGGAGGAATTAGAAAACGAGGAGATGTTTGATGTGACGGAGTTGAGTTACGAGGAGCAGTTGCAGGAAATAGAGAAGAGGAAGGAATCGGACAACTACAAGTACGCGGGATTCCAGtgtgatatttgttttaaaggaTTCGTGTTTAAGAAAGCTTATGTCGCGCATATGACCAAACATACTGATGCGTGGGGCGACCACGAGTGCACGTTGTGTAAGGTTCGGTTCAAGACCCCGCGACGGCTGAAGTTCCACACGGTGCGCTCGCACTCGCAGCGCTACAGCTGCAGGCGGTGCGACTATGTCACTAATGCTCCATATTCGGCTCAACTTCACGAAAAGTTTCACAAAGGAGAGAAATACAAATGTCCGCATTGCGAAAAAGAATTTGACAAGAAATCATCCTGTATGACACACATTCGCATCAAGCATCCGTCAGACATCGTTTGTGAACTGTGTGGTTATTCATTCGTGAGCGCCAACGGACTGCAAATgcataaacaaattaaacacaGACTCGATGAGAAAGAGATTCCAGAAGACGGTCCATGTTGTGTGGAATGTGAAATAAAGTTCGTGAGTGAGGAAGCGTTGAATACGCACAGACAGCAGTCCTTCAAGCATAACGTAGCGCCGAAGAGCGTGGGTCGTCCGGCGGGACAGAAGCGGTTCATGAAGAAGAAGTCGATCTCCAAGGGCGCCGGCTCTTCCGTCAGCTGCGAACAGTGTGACATGCAGCTGGCAGACTTCAAGTCGTACTACGCACACTTCCGCCGCATGCACCCCGGGAAGAACCGCACCAACTTCGGATCGGTGCGGACCAGCATCATGTGCGAAGTGTGCGGCAGAGTGTTCCAGTCGCTCTGCCAGCTGCAGGACCACAGCTTCACGCACGCGGACGGCAAGCAGTTCCCGTGCGGTGTGTGCGACAAGCGCTTCCAGACCAAGTACAAGCTGACGATGCACCAGCGCATCCACTTGAAGCGGCAGTACCCGTGCGACGTCTGCGGGAATAAATTCTCTTCCGCGGGCAATTTGAAGAATCATATGATTCTTCACATGGGCCTGACGTTCGAATGCGAGATCTGTGGCAAGTGTTTTAAACATCCGCAGAGCAAGAAATCTCACATGGACTACATCCACTTCGATAAACCACAGCGGAGCAGAGCCAAGAGGAAAGAATAA
- Protein Sequence
- MSAGKKIRISVKCCVKNCSNETKKINKSHGVTYHLFPKEKNLRNSWIAALGMEEPKIKSLVCSQHFRTEDYFVNKRGLRRLKMGVLPMATPLVCRMCLSTKRKMYNMSKQNILEHYEKLTATKGSKSDALPHHVCWECKARLSSFAKLRSAALRSLKLLRSFYDTVTNNIEASKDVSRIIDKHSKKLSSSLTRTHSEVNYADYHFTYTEPIPNYVDINVTDVKTELGDANDVEFDNNKPEFNDNDKSDDKNDIFDADNDKNDVFDDNDKLNNVTVNAELKDDDNFDSFDRNDHFDSSDDDDCLKTIKEKKIEEQKLEELENEEMFDVTELSYEEQLQEIEKRKESDNYKYAGFQCDICFKGFVFKKAYVAHMTKHTDAWGDHECTLCKVRFKTPRRLKFHTVRSHSQRYSCRRCDYVTNAPYSAQLHEKFHKGEKYKCPHCEKEFDKKSSCMTHIRIKHPSDIVCELCGYSFVSANGLQMHKQIKHRLDEKEIPEDGPCCVECEIKFVSEEALNTHRQQSFKHNVAPKSVGRPAGQKRFMKKKSISKGAGSSVSCEQCDMQLADFKSYYAHFRRMHPGKNRTNFGSVRTSIMCEVCGRVFQSLCQLQDHSFTHADGKQFPCGVCDKRFQTKYKLTMHQRIHLKRQYPCDVCGNKFSSAGNLKNHMILHMGLTFECEICGKCFKHPQSKKSHMDYIHFDKPQRSRAKRKE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00821944;
- 90% Identity
- iTF_00821944;
- 80% Identity
- iTF_00821944;