Hpro035090.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:3389306-3408087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.31 31 6.4 0.1 3 23 248 269 247 269 0.93 2 15 0.00027 0.027 16.0 1.5 1 23 339 361 339 361 0.97 3 15 0.0018 0.18 13.4 0.1 1 23 365 388 365 388 0.98 4 15 0.37 38 6.1 0.2 2 20 394 412 393 414 0.89 5 15 4.7 4.8e+02 2.7 1.7 1 23 451 474 451 474 0.78 6 15 2.1 2.1e+02 3.8 0.7 2 23 516 538 515 538 0.94 7 15 3.9 4e+02 2.9 1.4 2 23 565 587 564 587 0.91 8 15 0.13 13 7.6 0.1 2 19 610 627 609 629 0.94 9 15 9.9e-07 0.0001 23.7 0.6 1 23 635 658 635 658 0.94 10 15 0.23 24 6.8 0.1 3 20 664 681 663 683 0.90 11 15 0.64 66 5.4 0.6 1 23 690 713 690 713 0.89 12 15 0.0014 0.14 13.7 1.0 1 23 722 745 722 745 0.95 13 15 7.5e-05 0.0077 17.7 0.1 1 23 750 772 750 772 0.96 14 15 3.8e-05 0.0039 18.7 1.7 1 20 778 797 778 800 0.94 15 15 0.0015 0.16 13.6 1.5 1 23 806 829 806 829 0.96
Sequence Information
- Coding Sequence
- ATGGCTGGTAAAAGTACGGAATGGCGACCGGGGCCTACAGTTTGTCGTTGTTGTTTAACTGAAGGTTGCTACAAGGATATTTCTACGGAGTATTTTTGGATGGGAAAACGTGAAGTTTACGCTGAAATGCTTACAGACTCCTTCAACGTTTCAATCGCGTACTCCCAATCCGGCGGTCCCAACAGCAATAGTCGCCTGATCTGTGAGCCATGCATATCTCGTCTCCGTGATGCGTGCGACTTCAAGAGGCAGGTGCTGGAGTGTGAGAAGACCTTCATGAACCACCTTGACCCTGGAACATCGTCTGCAATTGATATGGAAGTTCACCTAGACTTGGCCGACAACGACGTGAAGTTAGAACGAGTGAAGCTAGAGAAACGACTCAGCGACGATGACTTCGATGATCGCGATTTCGATGACGACGATGATGATATGGACAACGAACCCCTAACAAAATTGGCAAGCAAAATCCCTAAAAAGGAAACAGTAGATCTCATGGACTTGTTAGACAACACCAAGGCAGCAGAAAAGAGAAAGTCCTCCTCAAAACTGAAGTCCTCTCCCTCAAAAAAGACTAAAATTGTGAAAAAGGAAATCATCAAACCGTCTGCTAGCAAAGTAACTCCCAAACCAGAGAAGAAGAAAAAAGcgGAAAATTACGATGCGGCGCGAGTAAACGCCGAGACCGTAATCAGCTGTACGACAGCCTATCCATTCAGAGTGAACGATAAGTCCATACTCTGCGTCTACTGCCAGGAGTTGTTCGAAGACCCGGATGTGTTCCGGACACATATGGACGAGGAACACGACTTCTTTAGCATCAAAGTCGCGTTCCACCACCTACCGAAAACTGAATTTATCAAAGCAGACCTGACAGACCTTAAATGCAGACTATGCAAAGAACCAATCGCAGATCTCGATAGCGTTTTGTCTCACCTCGAAGCAGTTCACAAAAAAGAAGTCCACACATCAGCCAAAATCGGAGTCATGCCTTATAGACTAACCAAATACCTGTACAACTGCGCCGTTTGCGAGAAGAACTTTCCGTCTCTCTTCCACTTGAACCGACACACTATATCCCATTTCTTGAGCTACGTCTGTGACGTGTGTGGAAGCAGCTATGTAGCAACCACTGGACTGCTCAAGCACATGAGATCTAAGCACCAGAGTTACGAAGTCACCTGCAAGAGATGCAGAAAAGTATTTCCTTCAATGGAAGCAAAGGAAAAGCATGCGAAACTGGTCAAGTCCTGCATGCCGTACTGTTGTCCAAGATGTGCTGAACGATTCCTCGATGCTAAGGCTCGACAGCAGCACCTTGAAGACGCTCACGGACAGTCGAAGAAGACGTACAAGTGTGGTATATGTGACGTGGAGTTTCTTCGCGTGTGTGCGTACTACGACCACTACAAGCTTCAGCATTCGGACGATTGCGTCGTTTGCAAGTATTGCAAGTTCGATCCGTTGTTCGAAGCGCGACAGAACGCTAAGGTAGTGTTGAGGTACTCGACAGCATATCCGTTCAGGATACCAGCCAATGACATGGTGTGCGTATACTGCTGCGAGCCCTTCGAAGAGCCACGGAAGTACAGGGACCATATGAGCAGGGACCATAGTTCTTTCAACGTGGACACCGCGTTCGCGCACACCTTCAGCGCAGAGGAATTCATCAAAGTTGATTGCACTGAACTCCAGTGTAGGATCTGTCATCAAATGCTCGATTCCCTTACCTCTGCGGCTAAGCATCTTCATTTAGAACACGATAAAAAGTTGAATTTGAGCGCAGATGTGGGATTGCAAACGTTCCAACTCGGACATGAACGATGGGTCTGTGCTATCTGTAAATTGAAATTCCCATCTCTTAGAGCTCTTAGCAGACACAATAGCTGCCATTACCACAAATACACGTGCGAAACCTGTGGCAAATCATACATAAGCAAGgagaatttaaataaacacatactTTTCGGACACTCGCAGGCGAAAATATGCGTCAAATGTCGAAAATCGTTTCCAAACAGCGAGGCCAGAAGATTACACGTTTTAGCGACAAGACGTTGTTGGCCTTTTGCCTGCAACCTTTGCGGTGACAGATTCGTGTCCAAAAAACTCAAATTCGCTCACAAAAGCGAAGTCCACAGTGTAAACTCTGTAAAGAAATGTCATACGTGTCCCGAATGCCAACTGTCTTTTGACGAGTGGCGGCAGTACAGGTCTCATTACATCATCTCGCATACCGATATGAACTATGTATGTCCATTCTGTGGCATTAAATTCGATAATAAAGGGTCTCTGGAGAGTCATAAAGTAATTCATACGAAAGAGAAGCTGTTCCACTGCAGCGTCTGCTCTAAATCGTTTGTGAGGAAGAAGAATCTTGCTCAGCACATGTGGATCCATAGTGAGCTTAAGAGGTTCCAATGTGTACCTTGTAATAAGCAATTCAATCAGAGGGTCAGTTGGAAAACCCATATGAGGTCCTACCATCCAGAGTTGGTTGATTTCTGA
- Protein Sequence
- MAGKSTEWRPGPTVCRCCLTEGCYKDISTEYFWMGKREVYAEMLTDSFNVSIAYSQSGGPNSNSRLICEPCISRLRDACDFKRQVLECEKTFMNHLDPGTSSAIDMEVHLDLADNDVKLERVKLEKRLSDDDFDDRDFDDDDDDMDNEPLTKLASKIPKKETVDLMDLLDNTKAAEKRKSSSKLKSSPSKKTKIVKKEIIKPSASKVTPKPEKKKKAENYDAARVNAETVISCTTAYPFRVNDKSILCVYCQELFEDPDVFRTHMDEEHDFFSIKVAFHHLPKTEFIKADLTDLKCRLCKEPIADLDSVLSHLEAVHKKEVHTSAKIGVMPYRLTKYLYNCAVCEKNFPSLFHLNRHTISHFLSYVCDVCGSSYVATTGLLKHMRSKHQSYEVTCKRCRKVFPSMEAKEKHAKLVKSCMPYCCPRCAERFLDAKARQQHLEDAHGQSKKTYKCGICDVEFLRVCAYYDHYKLQHSDDCVVCKYCKFDPLFEARQNAKVVLRYSTAYPFRIPANDMVCVYCCEPFEEPRKYRDHMSRDHSSFNVDTAFAHTFSAEEFIKVDCTELQCRICHQMLDSLTSAAKHLHLEHDKKLNLSADVGLQTFQLGHERWVCAICKLKFPSLRALSRHNSCHYHKYTCETCGKSYISKENLNKHILFGHSQAKICVKCRKSFPNSEARRLHVLATRRCWPFACNLCGDRFVSKKLKFAHKSEVHSVNSVKKCHTCPECQLSFDEWRQYRSHYIISHTDMNYVCPFCGIKFDNKGSLESHKVIHTKEKLFHCSVCSKSFVRKKNLAQHMWIHSELKRFQCVPCNKQFNQRVSWKTHMRSYHPELVDF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -