Hpro033344.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990153.1:783975-821230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.17 18 7.2 1.3 2 23 459 480 458 480 0.90 2 19 0.0081 0.83 11.3 0.0 1 23 490 513 490 513 0.95 3 19 0.035 3.6 9.3 3.3 2 21 640 659 639 660 0.93 4 19 0.039 4 9.2 3.6 2 23 721 742 720 742 0.95 5 19 2.4 2.4e+02 3.6 1.3 1 23 753 777 753 777 0.89 6 19 0.0044 0.45 12.2 0.6 2 23 784 807 783 807 0.96 7 19 0.086 8.8 8.1 0.2 1 23 813 835 813 835 0.93 8 19 0.0042 0.43 12.2 2.9 1 23 841 863 841 863 0.98 9 19 0.88 90 4.9 0.5 2 20 874 892 873 894 0.88 10 19 0.033 3.3 9.4 0.2 1 23 973 995 973 995 0.96 11 19 2.5 2.6e+02 3.5 7.2 1 23 1002 1024 1002 1024 0.95 12 19 0.0017 0.17 13.5 1.8 1 23 1066 1089 1066 1089 0.95 13 19 2.1 2.2e+02 3.7 0.8 1 13 1096 1108 1096 1109 0.90 14 19 0.018 1.8 10.3 0.2 2 23 1110 1132 1109 1132 0.96 15 19 0.0019 0.19 13.3 2.3 1 23 1157 1180 1157 1180 0.94 16 19 2 2e+02 3.8 0.6 2 19 1186 1203 1185 1205 0.85 17 19 0.00076 0.078 14.6 1.3 1 23 1210 1232 1210 1232 0.96 18 19 0.00015 0.015 16.8 0.2 1 23 1238 1260 1238 1260 0.97 19 19 0.00064 0.065 14.8 0.4 3 23 1268 1289 1266 1289 0.95
Sequence Information
- Coding Sequence
- ATGTCTGATCTGCCACTACCGTTGATCTTGTGTATGGAGAATGCTCTTGGTGAAGATGTAGCACTCCAGATTGAGCCCGATGACAACTTCCAGACTTTTCTTGATAAAgccaaATCACTCCTAGGCTTTGAAGTTGACATAAACTCAATCACGAGAAACCAACCAGTATCTTTAAATGACAATATCTACCAATTTCTGATCAAAGCTGAACAATCCATGCAATCTTTACAAGAGTTTGACCCAATGTTGGACAGTGAAAATACCAATGACTTGGTTTATATCTTAGATGATGGCACTCAGATTAGAGCTTCACAAATTCAGTTTGATAACGATGATCCTTTAATCGATCTGACAGCTGTAAAGATCCCTTTTGTGAAGTTGTCTGATGTTACTGATGACATAGAATTTGATAATCCTTCTATAGGAGAAGTAAAAAAGATTAACATAGTCGCTAGTCCAGTTTCAAGATGGTCAAGTAAGAATTCCAGTCCAAAAGGCAGTTTTGTCAACTCTCTGCCTTTTAAACTGATCTGCAATAATACTTCAGGTTTTGAGGCTCAGTTTACTAAGTACTTAGAAGCGAATTgcaataaaacttatacaacACTGAATCCGGtaaaaaatcgaaataaatCTCCGAAGAGTTTGATCAAAGATAACTTCCAAAATTATGGCTATCAACGAAATGATAGCTTGTCTTATACTAGAGAAGATGTCTTGAACATGTTCAAAGACTCTCCTATGACGTCACTTCCTTATGATCAAGGCTTCTCTGAGAGAAGGAATATAAGAAAGACGGATCCAGCGAGACTGGTGTATAAAACTTGGAATAAACCCCTCAGTCAAATTTGCTTCATCTGCGGCAACCATGTGGATAATGCCATAGACAAGTTATACCTCTTTGATAATGAAGACCAGAGACTACACAGATGTTCACCACAGAAGAAAAATTCTAcgcaattaaaaattatatgcgAATGTTGTTTGAATGAGAATTTTAGACCGTGCCGGATGAAAAGTGCAAACCAATTTTTGAATCCCGATGAGTTTTTGGTTATAAGAAATAATCAACAGTACATATTTCAGAAGATTAAGGACTTTACGTTTCATGTTACTAGTAAGCCACCAGAGTCGATCAGTACAGATGGGGCGGAGAGCTATTCAAATGGAGAAATGAAGGCCAAAGACAAGGAAGCGAAATCCGATGACGTCATAATAGTAAAGGTTGATAAAGAGGGTAGTTCGAGTGACGTAGAAATCATAGAGCCGCAACCGGAAATAGATCATATCATAGACAACTTGGAGGAGGCTGATGAGGAGGTCAAAGAGTTTTTGGGGAAATATTCTTGTGATAGTGTTGAAGTTACTGAACTTAAATGCAGATTCTGTGACAAAGTCTTTCCCGAGCTATCAGAAGTGACTGAACACTGTGAGACACACAAACATGATTTAGAAGACGGAGAAGTATTTCCTTGTCCATTATGTAACTATGGCTACGCAAATCTAAAATGGCTGAAAGGACATCTAAAAGCCGCTCACGAACGAAGTATAAGCCCTAAACTTGAGAATGTAAAGGAAGAAATTCAAGATGAAATAGAGGTAACATCTCCAAAAGTATCGTCTCCAATAGCGACACGGACCCGCAGCGCTAGGAAGAAAagtgatgatgaaaaaaaagacggCGACAAGTCTTTAGAAGAAAACCATGAAAAAAATGACTCTAACATAACAATGGAGCCCCACGAACCTCTCCTGATAAAAACCGAAGTAAAACAAGAAGCTATAGACAGCAGTGAGGATGAGATCTGGATAGTGCAAACCGCTGACGTGGAAGGTAGCCAGGAGTTGGAGAAGCTCCTGGCTGCAGCCAAGGGCACAGACGGCGCTaatgatataaaagaaaaagagaaatCTCTTAGCTGTTTTCATTGTAGAGAAACATTTACAACGGCAGAGAAATTATCCTCGCATCAATGCAGTCGGAAAAATCGTAAACGCAAGAGTAAAGATGACAATCTCATACAAATTCCTACTGAGGAGGACTTTTTAAAGAGAGCCCAAGGGCGTCCAAGACCAAATTCCACAGACGACAATGATCTACTGATGGAGCGTCCAAAGAAAAGATGCAACAAACAATCGTCGTGGAATCCCCGCATCGTGACATGTCATAACTGTAACGAGTCCTTCTCTTCCAAAGTGCGACTTAAATTTCATATGCAATTCCACGAACCCACATCGATGCTGAAGGACGGCGTGTACTCCTGCCAGGAATGTCCCGGAAGCTCCTTCTCATCGGAGACGCAGCTGTTCGACCACGTGCACTTCCAGCACGCCAAGCAGAAGCGGTGGCAGTGCCCCGTGCAGCAATGCGCCAAGACATTCTATCTCAGGGCTACCCTGACGAAGCACAGtcgcacgcacacagacacacgTCGCTACGTGTGTGTGACGTGCGGCAAACGATTCTTGGATAAGCAAACGCTGGACGAACATGGAGTCACTCATCTACAGATAAAGCCGTTCCAATGCCACATATGCTTAAAACAATTAACCCGTCGCTCTCGACTCCGCATGCACGTGCGTGCTCACGAAGAAGAGTTATCTCCTACGCTTGTTTGTGTGTGTGCTGTGTGTAAGCGAGCGTTCAGGGACGTCACACAGGCACAGgAGCATACGTCCAAGTCGCCAGAATGCATAGAAGTGTACGCTAGTGAGCTGAAGGTAGAAGCAGAAGATGTCTCAGAACTGCTGTCCCCTACCAGTGGAGTTGTACGACATAGAGTACATATTGTTGAATCCCCCAAGCTATCGAAGCCGATACCCCGTGAAGTATCCACCGAGACAGCTGAGCCGTTGTTATGTCAGCTATTGGACGAGGCCAGAGCTCTTATTCGAGTGGTCGAGATTGAAAAGGCGTTCAGATGCGAGTATTGTGAAGACGTGTTCTACACGGAGTCGGGTTTGAACGGTCATCGCGTGATCCACAAAGGCGTGAAGAACCCATTCACGTGTCATATCTGTAAAGTGAGCTTCGCTACTTATTCCAGATGCACAACACACAAAACGACACACGGTTTCTACAAGCGTACTCTACCGGAGGCTAAAAAGCAAGCGGACTCTAGTACTAGTAAAGAAGTAGTCTCTTCTTCAGCGGGTGGAATTCTAGGATATGGCGACTTTCCTGTTGTCAAACATTTCTTGTGTGAGGACTGTGGTCGTTCATATTTACACTGGACGTATTTACAAGTGCATCGCCGGATGAAACACGCCACtgaaaattatttacacaagtGTAATCAGTGTGAGCATACCTTTCCCAACAGAATACCATGTCGAGATTGCGAAGAGGTTCTTCCGAATAAAACTGCGTTGTATAAACATAGGAAGAAAGAACATAGCGATGGCAAGCTGTCTGCTACGAGAACTGCTAATATACAAGGAGTATCTTCAGAGGAGACGAGCACGTCTCACGCTTGTCCTCACTGCCCCGTCACCTTTATACACGCCAACGATCTGTATAAACATGTCAAAGAGACTCACAACCAAGATCCTCTATCCTGTCCATCGTGCAACATGCGCTTCCCGTCGCAAAGCGCGTCGCAGTCGCACGCGTGTGGCCGCCGTCCGCACGCGTGCCCCGTGTGCGGACACGGGTTCCGCACGCTGTCCATGCGGAATGAACACCTCCGGGTACACACCGGGGAGAGACCTTTTCCTTGCGATGTGTGTGGTGTCGCGTTTAGAAGGTCCACGGCGATGCGCAAGCACCGCCTGCTGCACAGCGGCGTGCGCGCGTGGGCGTGCGCGCGCTGCCCCAAGCGCTTCCGCGTGCGCGCCGACCTGCGCACGCACCTGCGCCTCAAGCACCCCGCCACGCTGCTCGTGCTCGAGATGGAAGGTCTCGACCCGTCTCCTGACGCTGTAATGAAGCACTTAGCTCTTCACAGCGTATCTCACGAAAAGGTTATAGAAATCACTAAGATATCGTTCGCTAAGGGCAGTACCAACGTGCTGCCGAACAGTACCCGCGCCCTGTCAGCTCTATCCGACGTGCCGAGGGAAGCTGTCGTGTGTCCCGCACCCACACCGCAGACACCACTGAAAGTGGAAGATCTCCAAGCAGAGCTGTCAGAGTTGAATGTCCAGCTCCTGTTCCGCGACGGCGTGCTGGTGAACGGCAACCAGATGGTACAACTGCAACACGACTCATTGCTACTCGACTACGGCCATCCCGGGACTGTTTGA
- Protein Sequence
- MSDLPLPLILCMENALGEDVALQIEPDDNFQTFLDKAKSLLGFEVDINSITRNQPVSLNDNIYQFLIKAEQSMQSLQEFDPMLDSENTNDLVYILDDGTQIRASQIQFDNDDPLIDLTAVKIPFVKLSDVTDDIEFDNPSIGEVKKINIVASPVSRWSSKNSSPKGSFVNSLPFKLICNNTSGFEAQFTKYLEANCNKTYTTLNPVKNRNKSPKSLIKDNFQNYGYQRNDSLSYTREDVLNMFKDSPMTSLPYDQGFSERRNIRKTDPARLVYKTWNKPLSQICFICGNHVDNAIDKLYLFDNEDQRLHRCSPQKKNSTQLKIICECCLNENFRPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKDFTFHVTSKPPESISTDGAESYSNGEMKAKDKEAKSDDVIIVKVDKEGSSSDVEIIEPQPEIDHIIDNLEEADEEVKEFLGKYSCDSVEVTELKCRFCDKVFPELSEVTEHCETHKHDLEDGEVFPCPLCNYGYANLKWLKGHLKAAHERSISPKLENVKEEIQDEIEVTSPKVSSPIATRTRSARKKSDDEKKDGDKSLEENHEKNDSNITMEPHEPLLIKTEVKQEAIDSSEDEIWIVQTADVEGSQELEKLLAAAKGTDGANDIKEKEKSLSCFHCRETFTTAEKLSSHQCSRKNRKRKSKDDNLIQIPTEEDFLKRAQGRPRPNSTDDNDLLMERPKKRCNKQSSWNPRIVTCHNCNESFSSKVRLKFHMQFHEPTSMLKDGVYSCQECPGSSFSSETQLFDHVHFQHAKQKRWQCPVQQCAKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPTLVCVCAVCKRAFRDVTQAQEHTSKSPECIEVYASELKVEAEDVSELLSPTSGVVRHRVHIVESPKLSKPIPREVSTETAEPLLCQLLDEARALIRVVEIEKAFRCEYCEDVFYTESGLNGHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRTLPEAKKQADSSTSKEVVSSSAGGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHATENYLHKCNQCEHTFPNRIPCRDCEEVLPNKTALYKHRKKEHSDGKLSATRTANIQGVSSEETSTSHACPHCPVTFIHANDLYKHVKETHNQDPLSCPSCNMRFPSQSASQSHACGRRPHACPVCGHGFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRKHRLLHSGVRAWACARCPKRFRVRADLRTHLRLKHPATLLVLEMEGLDPSPDAVMKHLALHSVSHEKVIEITKISFAKGSTNVLPNSTRALSALSDVPREAVVCPAPTPQTPLKVEDLQAELSELNVQLLFRDGVLVNGNQMVQLQHDSLLLDYGHPGTV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -