Hpro035509.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:6633248-6637425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 37 6.1 0.2 2 23 162 184 161 184 0.90 2 9 0.02 2.1 10.1 1.4 1 19 193 211 193 213 0.90 3 9 0.022 2.3 10.0 4.7 1 23 223 245 223 245 0.98 4 9 7.6e-05 0.0077 17.7 1.8 1 23 258 280 258 280 0.98 5 9 4e-06 0.00041 21.7 1.9 1 23 286 308 286 308 0.98 6 9 2.9e-05 0.003 19.0 3.9 1 23 314 336 314 336 0.98 7 9 3.3e-06 0.00034 22.0 1.9 1 23 342 364 342 364 0.99 8 9 0.00076 0.078 14.6 0.1 1 20 370 389 370 390 0.96 9 9 3.3e-05 0.0034 18.9 0.2 1 23 399 422 399 422 0.93
Sequence Information
- Coding Sequence
- atgcaTTGGACTCAAGTAATGATTGACAGTGAAGTGTATAACTACGAATATTTCCTTCAAGAAGATGTCTGCAGACTTTGTTGGAGCAGAAATGCAAATATTGATCTCCTTAATCAAAAGTTGGAGAATTCTACTTTGACACCGCTTCTAGATATAATAAAAGATTGCTTAGAAATAGATCTGCATAATATAACTCCGATAAAAGTGTGTGAGAATTGTAGCAACGAGTTAAAAAGGTTTGATTCTTACAAAGCCTTTTGTCGAGAATCTGTTGAAAAATTGCAAGAAATCATTCAGAACGGTATTAGTGAGCTCAATAATCAAGTTCTAGAGCTAAGCACAGTAAAAGAGGAGAtatttgatgaaaatattaataatttagacacTTTTCTCGATGATACCATAGACTTCGAAGAGACAAGTAAACCTCTTTTAGCAAATTCGAAATTcagaaaaaagtatttaatcaaACGGTCGCCTACTTACTGCAATATTTGCAGCATAGATTTAGAGAATAAAGAACAACTTTCGGAACACAATAATGAGCTACATGGAATTGAAAATAATGGAAccctttttaaatgttttggtTGTGAAAAGAggtttaaaaatagaaaaacacgAGTCAGTCATGAAGTGAATTTCTGCAAAGGGTTAAAAGATGGATATAAATGCAATATTTGCGAGAGACATTTACCAAAAAGGTGTATGTATGAAAGTCATATGAGAGACCATAGACATAAAGCACTGGTAGAGTTGCCAGAGCTCATGTTTAAATGTAGCAAGTGTGTGAATATGTTTAAAACTAAGGAACTATTGAGGAATCATATGCTGGAACATGAAACACAGAAGAATTATGTTTGCGatGCATGCGGGCGCGTGTTCACTCGTCAGGACTACCTGCACAAGCATAAGCTAACTCACACGGGCACCAGAAGTCACCAATGTCCACATTGTGACTTTAGAGCTACTCAGCGGTCATCACTCACTGTTCATATAAGGAAGCACACAGGGGAACGGCCATACAGTTGTGACATTTGTCCGCAACGGTGTATATCTAGCAGCAATCTGCGAGCGCATCGGAGACGACATCTTGGGGATAAGAAATTTGAGtGTACAATATGCAACAAAAAGTTTGGATACAAATTAAGCCTAGAAGAGCACATAGCTTGTACCCACGTGCGTTCCGAATCATATCCCTGCGAGTACTGTGGCGCCACCTACACAAGACTGAGGGGGCTACGGCGCCATCTAGCGGCGAAACACTCGAAACACAAAAGTAAAACTATTGAAGAAAGTATTTTAGTACAAGTTTCGGAGGTTGctgcaaacaaaattcatgttttaaaAGATGTGGAGTACGAGTTGAAGGATAGTGAGAATGTGTTGCTACTTAAACATCAGGACGGGGATGTTTATATGGtgtaa
- Protein Sequence
- MHWTQVMIDSEVYNYEYFLQEDVCRLCWSRNANIDLLNQKLENSTLTPLLDIIKDCLEIDLHNITPIKVCENCSNELKRFDSYKAFCRESVEKLQEIIQNGISELNNQVLELSTVKEEIFDENINNLDTFLDDTIDFEETSKPLLANSKFRKKYLIKRSPTYCNICSIDLENKEQLSEHNNELHGIENNGTLFKCFGCEKRFKNRKTRVSHEVNFCKGLKDGYKCNICERHLPKRCMYESHMRDHRHKALVELPELMFKCSKCVNMFKTKELLRNHMLEHETQKNYVCDACGRVFTRQDYLHKHKLTHTGTRSHQCPHCDFRATQRSSLTVHIRKHTGERPYSCDICPQRCISSSNLRAHRRRHLGDKKFECTICNKKFGYKLSLEEHIACTHVRSESYPCEYCGATYTRLRGLRRHLAAKHSKHKSKTIEESILVQVSEVAANKIHVLKDVEYELKDSENVLLLKHQDGDVYMV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -