Hpro032710.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990152.1:1333620-1335122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0038 0.39 12.4 1.0 1 23 98 120 98 120 0.96 2 12 0.021 2.2 10.0 1.5 1 14 130 143 130 150 0.84 3 12 0.019 2 10.2 0.6 1 23 159 182 159 182 0.94 4 12 0.02 2 10.1 0.4 1 23 187 210 187 210 0.94 5 12 0.00074 0.076 14.6 0.7 3 23 216 236 214 236 0.97 6 12 1.5 1.6e+02 4.2 1.0 1 19 242 260 242 264 0.88 7 12 0.0017 0.18 13.4 0.6 2 23 270 291 269 291 0.96 8 12 8e-05 0.0082 17.6 0.9 1 23 296 318 296 318 0.97 9 12 0.038 3.9 9.2 1.6 2 23 374 396 374 396 0.96 10 12 4.8e-07 4.9e-05 24.6 0.6 1 23 402 424 402 424 0.98 11 12 0.51 52 5.7 1.0 2 21 430 448 429 450 0.93 12 12 1.9e-05 0.0019 19.7 0.9 1 23 456 478 456 478 0.98
Sequence Information
- Coding Sequence
- ATGTTGAACAATTTCTTGAATGAAATTTACAAGCAAACATGTTCTGCTCGAGACCAAATACGGGCACAAAAGAAATGTACTGTTCGTGAAGCCTATATATCCCTCACAAACTGTTATTTTGGCAACAGTTGCAGTAACGAGGCCACAGAATCGCAGCCAGCGAAACCCCAGCAAGTTATTGTGACGAATGTGAGGGTTTTAAAACCGCCAACTCCAGTTGAACCAAAGTCAAGCACCCTACTAGCTTCATACAAAACAAAGCTACAAGACGCTAAATTTCGTCAAAACAACcatatatgtaaaaaatgtggTACTATTCTCAACTCTGAGCAAGCATTGATTAAACATTACAAACTGCACACGAAAGTACCGACCAAAATTGGGAGCTTTGCATGTCCTTACTGCGATATGTCATTCTCTAACCAAAGATTCTGTGAAGCTCACAAAGGCTCATGCGGCGCTCACAAAAGGGATTTTCTTTGCAACACTTGTGCTGCCGCCTTTGACACGATGATGGAACTAACGCACCATATTAAAGTGAAACATGCAAAACGAATTTACCGGTGCACTTTATGTGAAAAAGCATTTCTCAACGAAGCCAATAGGAATGAGCATATGGAACAAAATCATGGCAATAAGAAACACTGTGTTATCTGTCAAGAGACATTTTTCTCTGTAGCTGATTTGTTAGTCCATATGAGAAGTCACAGACCTGGAGTGAAATACACGTGTGAGGTTTGCAGCGCTGAGTTCGACGATTTACGGGTGTACAGAGCTCACTGCGTTAAGCACACAGGGCCCATGGTAACTTGCAGCCTTTGCCAAAAAGAAGTGAGGCAAAGTGGCTTAAAGAAGCACATGGCGACGAGACACAAAAAACCGATGTTCAAATGCTCTACTTGCGGAGAAGTTTTCGAGcacaatattttgttaaagtATCACCAAATAGCACACTTACCGGGGATGCCATATCCAAAATACGATTTGCTGGTCAATCCTGACAGGCCACCCCGGTCCGAGTCTGTAGAAGATTCAAAAGAAGAGTCTGATCCATTGAAAATTCCTAATCCAGATGACCAAACTGCAGAGACACAATCTAAACCTCAGCGGAAAATTCGATATTGCCAGTTCTGTGACTACACGACCAAGGCTTATGGTACTTTTAAGAGTCATATGAATCGGTACcatttgaaaattcggcctttCGTGTGCAAAATGTGTAATAAAGCTTATAGGAGTAAGGTTAATTTGAGGAACCACATGGCTATCCATACAGGTAACAGGGTGGAGTGCCCGCTGTGTAAAAAAGAAGTTCCCGAACGGAATTTGAAGCTTCACATGCGTTGTCACATCGAAGATCACAGGTTCACATGTCAAATTTGTGGCAAGACCTTTGTATCTAAGGTTGTTTTTGAACAGCATAAGTTAACGCATCCGAAGGGCGAGTCGAGTGTGTCTTCTGTGAGTGTTATAGCAAAAGATTCTTTGGATTTACAAGAATAG
- Protein Sequence
- MLNNFLNEIYKQTCSARDQIRAQKKCTVREAYISLTNCYFGNSCSNEATESQPAKPQQVIVTNVRVLKPPTPVEPKSSTLLASYKTKLQDAKFRQNNHICKKCGTILNSEQALIKHYKLHTKVPTKIGSFACPYCDMSFSNQRFCEAHKGSCGAHKRDFLCNTCAAAFDTMMELTHHIKVKHAKRIYRCTLCEKAFLNEANRNEHMEQNHGNKKHCVICQETFFSVADLLVHMRSHRPGVKYTCEVCSAEFDDLRVYRAHCVKHTGPMVTCSLCQKEVRQSGLKKHMATRHKKPMFKCSTCGEVFEHNILLKYHQIAHLPGMPYPKYDLLVNPDRPPRSESVEDSKEESDPLKIPNPDDQTAETQSKPQRKIRYCQFCDYTTKAYGTFKSHMNRYHLKIRPFVCKMCNKAYRSKVNLRNHMAIHTGNRVECPLCKKEVPERNLKLHMRCHIEDHRFTCQICGKTFVSKVVFEQHKLTHPKGESSVSSVSVIAKDSLDLQE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -