Hpro019963.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990139.1:17819013-17834432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.8 1.9e+02 3.9 1.1 1 23 88 111 88 111 0.94 2 19 2.2 2.3e+02 3.7 0.2 3 23 116 136 114 136 0.95 3 19 5 5.1e+02 2.6 0.0 2 23 140 162 139 162 0.92 4 19 0.035 3.5 9.4 0.4 2 23 394 416 393 416 0.96 5 19 0.91 93 4.9 0.0 1 20 424 443 424 445 0.95 6 19 0.035 3.6 9.3 1.5 3 23 456 476 455 476 0.96 7 19 9.9 1e+03 1.6 0.5 1 23 492 515 492 515 0.81 8 19 0.00047 0.048 15.2 1.4 1 23 524 547 524 547 0.93 9 19 0.092 9.4 8.0 0.4 3 23 625 646 623 646 0.86 10 19 4.2 4.3e+02 2.8 1.3 1 23 651 674 651 674 0.92 11 19 2.3e-05 0.0024 19.3 1.5 1 23 680 702 680 702 0.97 12 19 3.5e-05 0.0036 18.8 1.3 1 23 709 731 709 731 0.98 13 19 0.00011 0.011 17.3 2.3 1 23 736 758 736 758 0.96 14 19 0.0003 0.031 15.9 2.2 1 23 764 786 764 786 0.98 15 19 5.9e-07 6e-05 24.4 1.9 1 23 792 814 792 814 0.98 16 19 0.0005 0.051 15.2 3.3 2 23 821 842 821 842 0.98 17 19 0.00091 0.094 14.3 0.6 2 23 850 872 849 872 0.97 18 19 0.00011 0.011 17.3 0.3 1 23 877 899 877 899 0.96 19 19 0.0031 0.32 12.6 2.0 1 23 905 928 905 928 0.97
Sequence Information
- Coding Sequence
- ATGACTTCAGACGAATCTGATGATGAACCGCTATCGGTTATTGCTGCAAACAAGAAACAGAACCCAAAAGACTTTCCAGCAGAAACGCCAGAAACATCGACTGCCATAAATTTAGTAGTGCCTAAAAAGAGAAAAAGGAAATTGCCGCCGCCTAAACGGTTTCCGATAACTATAAAACTCCATAAAAATGAACAACCTGCGGTAATCGAACGTCCTGCCGACGTTTGGCTTTATCTAAAAGACCTGAATCCTGCCGGGCCGTACAGCTGCTTGCTATGCCCTGAGTGGTTTATTAACAGATCAAAGATGATCCTGCACTATTGCCTCAATCATAAAAAAGACTTTTGCGGTATTTGTAGGTACTTTGTGCCTGATAGAGAGACTTGGTGGAATCACACTAAGTTCCACACACCATGGCCTTGCTCACAGTGTGTAGAAAACTTTGAAATTGAAGCAGTATTGCGCTTGCACCTGAGGGCTGTTCATCAACTGGTGCACTGTCGACTTTGCCATTTTAGACTTGCTGATGGTGATGTGTATCATACACATTTGtttcaaaaacataatattacaaatgttGCAAACAGAGATGAGGAGAACCTATGGGATATTGAGGGCGAAGGGAGCCTTACCTTTTCATGCCTTCTTTGTTCTAAGTCAGATAATACTATGAAGAACTTCTTTACTCATTACATGGGCTTCCACCACTTTACCTTGAAGTGCTTCACGGGGCTTGTAGCTGGTAGGGATCTACCATTTGTCGTTCACGGAGCTGATGTAAGACCAGAGTTCATTGAAGAACAATTGAAGAACTGCCCTCGTTTTGGTTATGTAGATTTTGAGTACAAAATTCGTGATTGCATAGAATCTGATCCTAATGTAGGAGATTCAAAAGATTTGCTCAAAGTTCTGATACCTGAGATCAAGCAAGAAATTTTGGGTGAAGAAGATGAAGTAAAACTTAACAAAGAGATTGCTTCAAGGCCTTTTAAAGACGAAGCTACAGTGAAAAGCTATGAGGGTGATGAAGACTATGATGTAACTTTAACagagttgattattttagaaaatatcttCTTTGATTATGTTAACCGATTACAGTATGACATGGACTCCAACCAGGTTAATGATTCCAACATAGAATTTGAGAAGTCTATAGTTGATATGACTATTGATGTAACTTGCTCACTCTGTAAAGTAGAATTTAGCAATGTGCAAACATTTGTAACCCATATGATAAAAATGCactgttttaaatataagccAATTTTCTCATGTCGAGTGTGTGTAGCTACTTATGACAGTCCGAATGACCTAGATAATCATATTGGCCGTGAAATGGCAGATTTTGAAGATTTATGGCTGTGTCAGTTTTGCGACAAAGAGTTTGACAATAGAAACGAGACACGCAAGCATTTAACAGAGCATTGGGACCAGTTGGAGTATGATAATTGTTTTAGTCCACATTTGGGCTTCAAGTGTATGTATTGTCCAACTCTGTTCTGGCATGAAGCTGATAGAGAAGTTCACCAGGTGCGGGTGCACTTTTCTAAgcataaagaaaattattacaaGTGTGAAACCTGCAATGAAGTTTTTAGTGATAAGGTCTGGTTCATTCACCACTACATAGACAAGCATGCTATGGCAGACAGAGTCCCCCTATACCTCATGAAGTGTTGCATTTGTTGCCTGGTATTACCCAACGTGGATGAAATGAGGGCTCACTTCAATGAGCATCATCCCGAGGCCAAGAAGATGTTCTGCTCTCTAGACTCTTGCAAGTATAAGCCGCTGAGTCATAGGAAAAGCTTTAAACTTCATTTGAGGTCAATCCACAACCCCCGTGTTCGCGCAGAACGTAACATGGATTGCACAGTGTGCGGGCGAGAGTTCAGCAGCTCTAGAGCCTGTGGAGCTCACATGGCTCAAGCACACGGCCCTGGGAAATTCAAGTGTAAACTTTGTGAAGAGATGTTGCATACTGTGGATGAAAGAAAACTCCACTACCTCATCAGCCATCCTGGCCAGAACCCGTTCGAATGTACGGAGTGCGGGAAATCGTTTCAGTATAAATCGTCTCTCTATATACACAAGCAAGAACATCAGCCCAACAAACAGAGCTATACCTGCACTTATTGTGGCAAGATTTTCATGAAACGCGACTCATTCCGCGAGCACGTCCAAATCCACGAAGGTCCCCGTCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGCCGCCACACCGGGGAGCGCCCCTACGCCTGCCCCCACTGTCCCCGGAGCTTCGCCGACAAGGGCGCTTGCACCTCGCATACCAGAACTCATTTGAAAGACACATCGTACGCGTGCATGTACTGCGGGAAGACCTTCGTGCAGAAATCCAAACTCACCTATCACATCAGAAAGCATACAGGCGAGAacTTAGAAACATGCTCCGTGTGTTCCAAGTTGTTCACCAGTGCCTGTTCACTGCGGGAACACATGAAGACACATACTGTCAAAAAGAACACCATCCAATGTCCTCTATGTGACCGCAAGTACCAGGACGAGCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGCGCGCGCGCCACGCCTGCCCCGTGTGCGGCAAGATGCTGACGAGCGCGGCCGGCCTGAGGCATCACGTCATCACTCACAGCTCCCTCAAGACTTTCATATGCAAAATGTGTCCAAAAGCTTACTCCGTGAAGAGAACAATGCTGAAGCACTTCCGTCGTCGCCACGGCTTCACAGGCAAGGAACCCAACATGAAAGACTTCTACACCCGACTGGAGCCCCGGGAATGCAACCTCAAGCTCGACGAAGATGTCATGACCAGCATATTCGGACCTCCGAAGAAGGACAGCGGACTCCTCATGGAAGACTTTGTCACTATAGCTAACttgcaaaagaataaaaaaatgctacagAATCCAGCTGAAGTCCGTCCCGAAATTGATGACGACGATGAAGATGAACAGAATGAGTCCAAGTCTGAATCTGAAGACGAGTCAATGGAGCAGGAAAAGGACAACACTAATTCAGACAGTGAGAAAGATAGAGACGAAAAATCTGATACTGTGAAAGctgaaaataaagattttagcGATCAGGGGGAACATGAATTGGAACCTACAGATTTTGTCAGCGTGAAAATTGAGCCTTTGGACGACGATGAGGTCATTACAGGAttagattaa
- Protein Sequence
- MTSDESDDEPLSVIAANKKQNPKDFPAETPETSTAINLVVPKKRKRKLPPPKRFPITIKLHKNEQPAVIERPADVWLYLKDLNPAGPYSCLLCPEWFINRSKMILHYCLNHKKDFCGICRYFVPDRETWWNHTKFHTPWPCSQCVENFEIEAVLRLHLRAVHQLVHCRLCHFRLADGDVYHTHLFQKHNITNVANRDEENLWDIEGEGSLTFSCLLCSKSDNTMKNFFTHYMGFHHFTLKCFTGLVAGRDLPFVVHGADVRPEFIEEQLKNCPRFGYVDFEYKIRDCIESDPNVGDSKDLLKVLIPEIKQEILGEEDEVKLNKEIASRPFKDEATVKSYEGDEDYDVTLTELIILENIFFDYVNRLQYDMDSNQVNDSNIEFEKSIVDMTIDVTCSLCKVEFSNVQTFVTHMIKMHCFKYKPIFSCRVCVATYDSPNDLDNHIGREMADFEDLWLCQFCDKEFDNRNETRKHLTEHWDQLEYDNCFSPHLGFKCMYCPTLFWHEADREVHQVRVHFSKHKENYYKCETCNEVFSDKVWFIHHYIDKHAMADRVPLYLMKCCICCLVLPNVDEMRAHFNEHHPEAKKMFCSLDSCKYKPLSHRKSFKLHLRSIHNPRVRAERNMDCTVCGREFSSSRACGAHMAQAHGPGKFKCKLCEEMLHTVDERKLHYLISHPGQNPFECTECGKSFQYKSSLYIHKQEHQPNKQSYTCTYCGKIFMKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACTSHTRTHLKDTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCSVCSKLFTSACSLREHMKTHTVKKNTIQCPLCDRKYQDERYMLRHLRTSHTRARHACPVCGKMLTSAAGLRHHVITHSSLKTFICKMCPKAYSVKRTMLKHFRRRHGFTGKEPNMKDFYTRLEPRECNLKLDEDVMTSIFGPPKKDSGLLMEDFVTIANLQKNKKMLQNPAEVRPEIDDDDEDEQNESKSESEDESMEQEKDNTNSDSEKDRDEKSDTVKAENKDFSDQGEHELEPTDFVSVKIEPLDDDEVITGLD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -