Basic Information

Insect: Hypena proboscidalis
Gene Symbol: -
Assembly: GCA_905147285.1
Location: LR990155.1:4217722-4222845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.44 45 5.9 0.4 2 23 15 37 14 37 0.95

2 18 2.9 3e+02 3.3 4.7 3 23 61 81 59 81 0.94

3 18 0.0006 0.061 14.9 0.0 1 23 85 107 85 107 0.93

4 18 0.0081 0.83 11.3 0.6 1 23 112 135 112 135 0.95

5 18 0.7 72 5.2 2.4 1 23 142 165 142 165 0.92

6 18 0.0027 0.27 12.9 5.0 1 23 171 194 171 194 0.98

7 18 0.0019 0.2 13.3 2.6 1 23 200 222 200 222 0.97

8 18 3.1e-05 0.0032 19.0 0.6 1 23 228 250 228 250 0.99

9 18 0.0017 0.18 13.5 1.9 1 23 351 374 351 374 0.94

10 18 1.5 1.5e+02 4.2 1.5 2 23 401 423 400 423 0.94

11 18 0.11 11 7.8 0.8 2 23 446 467 445 467 0.95

12 18 0.0098 1 11.1 4.0 1 23 471 493 471 493 0.96

13 18 0.0087 0.89 11.2 0.2 1 23 498 521 498 521 0.96

14 18 0.053 5.5 8.8 0.4 2 23 529 551 528 551 0.90

15 18 0.0012 0.12 14.0 0.7 2 23 559 581 559 581 0.96

16 18 0.00012 0.012 17.1 4.7 1 23 587 609 587 609 0.97

17 18 2.3e-06 0.00024 22.5 3.6 1 23 615 637 615 637 0.98

18 18 0.00017 0.017 16.6 5.0 1 23 642 665 642 665 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.44	45	5.9	0.4	2	23	15	37	14	37	0.95
2	18	2.9	3e+02	3.3	4.7	3	23	61	81	59	81	0.94
3	18	0.0006	0.061	14.9	0.0	1	23	85	107	85	107	0.93
4	18	0.0081	0.83	11.3	0.6	1	23	112	135	112	135	0.95
5	18	0.7	72	5.2	2.4	1	23	142	165	142	165	0.92
6	18	0.0027	0.27	12.9	5.0	1	23	171	194	171	194	0.98
7	18	0.0019	0.2	13.3	2.6	1	23	200	222	200	222	0.97
8	18	3.1e-05	0.0032	19.0	0.6	1	23	228	250	228	250	0.99
9	18	0.0017	0.18	13.5	1.9	1	23	351	374	351	374	0.94
10	18	1.5	1.5e+02	4.2	1.5	2	23	401	423	400	423	0.94
11	18	0.11	11	7.8	0.8	2	23	446	467	445	467	0.95
12	18	0.0098	1	11.1	4.0	1	23	471	493	471	493	0.96
13	18	0.0087	0.89	11.2	0.2	1	23	498	521	498	521	0.96
14	18	0.053	5.5	8.8	0.4	2	23	529	551	528	551	0.90
15	18	0.0012	0.12	14.0	0.7	2	23	559	581	559	581	0.96
16	18	0.00012	0.012	17.1	4.7	1	23	587	609	587	609	0.97
17	18	2.3e-06	0.00024	22.5	3.6	1	23	615	637	615	637	0.98
18	18	0.00017	0.017	16.6	5.0	1	23	642	665	642	665	0.98

Sequence Information

Coding Sequence: ATGGAAAAGAGCTATTCTGTTAAATTAGATATAACTGGCTTAATTTGCAAACTATGTAACCAAAACATGGACTCACTAGAGTCATTATACGAACATTTGAGAAGTAAACATAAGAAGACTATTTATACGGGAATCAAAAATTTGATAGTGCCCTTTAAATTTGATAGTGAACAGATATGCTGCTGCGTTTGCGCTAGCCCCTTCGACAGATTCAAGACATTAGCAGAGCACATGCATACTCATTACAGAAACTATGTGTGCGCGATCTGTGATCTCGGATTCGTGACGCAAATGGCCCTGAAACGACACGCAGGAAACCACAACAATGGTTATTTTGAATGTGAAAGTTGTTCTAAAGTATTTAGTAGCTTGGCTAAGAAGAAGAGTCACGAGAAAATTGTGCATTCTGATAATCGAGAAAAGCACAAATGTGGTTACTGCAATGAACGATTCCTTCAAGCATATCATAAAGACGAACATTTAGCAACAGTTCATGGAATAGATAGCAAATTTAAATGCCGAGCTTGCGAGAAAACCTTCTTCAGCCATAATGCTTTGACGAGACACACAAGAAGACAGCATTTGTTGGAAAGAAAGCATAAATGTGCCGAGTGTGAAATGGAGTTTTTTACTGCCCATGAATTAAAAAAGCATGGGTTAACGCATTCTGGCATAAAAGAGTTCCAATGTGAAGTTTGCCTGAAGCAGTATGCCAGAAGGAAGACTTTGATAGAACACATGAGAATACACAACAATGAAAGACGATTTAAATGTAGTCCAGAGATAAGTGTTGTGAAAAAGGAGATAGAATCGGGAAGTGACGATGAAAAAccacttttatgttttaaaaataaatctccaAGAACTGATTTGGCTAAACGTCACGATAAAACCGAAGAATCAACAGAAAGTGAAGGAGAAGAAGATATATTTTTACCTTTTAATAATAAAGCTGCTTCTCGTACTGACTTGGCAAAGCATCGGGCTAATATTACAGAGATAATCATGAATTCTAACGCGACACCTATAAGGCGGTACGGGGGAGTCGGTTATACGTGTTGCTTCTGCAAAGAACAATACGCAGACccagcaaatttaaaaaaacacactcTGGAAAGTCATCCAGACGTGTCTGAAGCGAATTTTATCAAAAGTATGAACATGTCCGAGTATGTTGTCAAGCTGGATATTACTGCGCTTCATTGCAAACTATGTAATACAGAAATGGACACTTTAGAAAATTTTATCgaccatttaaaaaatactcaCAGGAGACGTATATTTACCGATATCAAAAACCAGATATTCCCTTTTCAATTTAACGGTGACACACTCAAATGCGTGATGTGTTCAAATACCTTTGATAGGTATAGAGTTTTAGTTGCTCATATGCACGGTCATTATAAGAATTTTTGTTGCAATATTTGCAACGCTGGATTTGTAAACCGCAATTCTTTTACACAGCATTTGGAGCACCACAGGACAGGCAACTTCGCCTGCGAGTATTGTCCTAAAGTCTTAACAACGCAATTGGCGAAACGGAATCATGAAAGATCAGTACATACCCACTTAGATGCGGCAAATAAATGTGGATACTGCACAGAAACTTTCAAGGACTATAGGAAGAGAGAAATCCATTTAGCCGAAGTACACGGTGTCAAGTTTTCAACTCCGAAATGTACTGCTTGTGATAAAGTGTTTAAGAGTAGAAGATTGCTTGGTATTCATGTCAAAAGAGACCATCTTATGGAAAGACCGCATAAATGTAGCGAATGCGATATGGCATTCTTTTCCTCGACCCATCTAAAGAATCACATGGTCAAACATACAGGGACTCGGAATTTCGAATGTACTATTTGCCACAAGACGTATGGGAGGAAGAAAACGCTAAACTCTCATATGCGTGTCCATGAAGAAGAGAGATTTAAATGCGAACACTGTGATGGATCTTTCGTACAAAAATGCAGTTGGAGAATACATATGCGGACTAAGCATGGAGTAGTTGTTTAA
Protein Sequence: MEKSYSVKLDITGLICKLCNQNMDSLESLYEHLRSKHKKTIYTGIKNLIVPFKFDSEQICCCVCASPFDRFKTLAEHMHTHYRNYVCAICDLGFVTQMALKRHAGNHNNGYFECESCSKVFSSLAKKKSHEKIVHSDNREKHKCGYCNERFLQAYHKDEHLATVHGIDSKFKCRACEKTFFSHNALTRHTRRQHLLERKHKCAECEMEFFTAHELKKHGLTHSGIKEFQCEVCLKQYARRKTLIEHMRIHNNERRFKCSPEISVVKKEIESGSDDEKPLLCFKNKSPRTDLAKRHDKTEESTESEGEEDIFLPFNNKAASRTDLAKHRANITEIIMNSNATPIRRYGGVGYTCCFCKEQYADPANLKKHTLESHPDVSEANFIKSMNMSEYVVKLDITALHCKLCNTEMDTLENFIDHLKNTHRRRIFTDIKNQIFPFQFNGDTLKCVMCSNTFDRYRVLVAHMHGHYKNFCCNICNAGFVNRNSFTQHLEHHRTGNFACEYCPKVLTTQLAKRNHERSVHTHLDAANKCGYCTETFKDYRKREIHLAEVHGVKFSTPKCTACDKVFKSRRLLGIHVKRDHLMERPHKCSECDMAFFSSTHLKNHMVKHTGTRNFECTICHKTYGRKKTLNSHMRVHEEERFKCEHCDGSFVQKCSWRIHMRTKHGVVV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -