Hpro032732.2
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990152.1:1674303-1677982[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00043 0.044 15.4 0.1 1 23 202 225 202 225 0.95 2 20 0.00011 0.011 17.2 1.5 2 23 230 251 229 251 0.97 3 20 0.0015 0.15 13.7 0.1 2 23 302 324 301 324 0.94 4 20 3.2e-06 0.00033 22.0 0.7 1 23 329 352 329 352 0.98 5 20 0.18 18 7.1 0.9 2 23 356 377 356 377 0.96 6 20 0.038 3.9 9.2 1.4 1 23 382 405 382 405 0.94 7 20 0.0013 0.13 13.9 0.2 2 23 468 490 467 490 0.95 8 20 0.016 1.7 10.4 3.9 1 23 496 519 496 519 0.93 9 20 0.023 2.4 9.9 0.1 2 21 523 542 523 543 0.93 10 20 0.067 6.8 8.5 0.5 3 19 553 569 551 569 0.97 11 20 0.76 78 5.1 1.7 1 23 579 602 579 602 0.95 12 20 0.083 8.5 8.2 0.5 3 23 622 642 620 642 0.96 13 20 0.37 38 6.1 0.4 2 23 649 670 648 670 0.90 14 20 2.2e-06 0.00023 22.5 0.0 2 23 708 729 707 729 0.96 15 20 0.16 16 7.3 0.3 3 23 735 753 733 753 0.91 16 20 0.092 9.4 8.0 1.3 1 23 767 790 767 790 0.97 17 20 0.00015 0.015 16.8 0.7 1 23 796 818 796 818 0.98 18 20 0.00011 0.011 17.2 5.2 2 23 825 846 824 846 0.96 19 20 0.00032 0.033 15.7 3.0 1 23 852 875 852 875 0.96 20 20 0.23 24 6.8 0.7 2 23 881 903 880 903 0.95
Sequence Information
- Coding Sequence
- ATGGACGAATTAGTTTCAACAACAACGTCTGATCAAGACTACTATGACTATGTGAAACTAAAACTGAAGTCAGTATGTCTATCTGCTAAGTTTTGTGGACTTTGTTTGCAAAGTGAAGGAGACCTTCATCCACTTGACTTACAGTTCATTATCAATAATCAGAAGTACACTAAATGTCTACATGATATTCTGAATTATGTGTTTAATGATgatattaaaaatctaacatcaaGTTCTTATGTATGCAAAATCTGTACTAATAAAGTTATGCAGTGTTACACGTTCATACATAATGTCAAACAAACACTAAGGCTCATGGACAACTGTGTGGATGATATGTCCACCAAAATTGACTATATTCATAATCAATTTGATACAACATTTGATTTGGACACAAGTGTAATAATTGCCGCTGATACTGATAACAAAGATCTGTACTATAGTATTATAAACACAGATAGAATTGAAATTCTGCCAATTGTTTATCCTCGTATCGTGGAAGAACAAGATCTAaagaaatacaattttaaatcttcaACAGTCAAGGTTAATACAATCAAGAAGAAAGTAGGTAGAAAACGTAAATACTTGCCGACAGACACTTTTCCCTGTAAAATTTGTCCAAAGGTCTTTGCAGTATACAAACGTCTAGCAAGGCATGAACGAGAGGTACATAGCCAAGTGTGGACTTGTGACTTATGTGATCAATATTTTACCTCAAAGCGAGAATTTAAAGCACATTATAAGACTCATGATCAAGAAAAAGCTTATATGTCGAAAAGCAGTGTTGAGAAATTAGCCATTTCAAGTCAAACACCAAAAGTTGACATCAGTGAAATTAGACTAACAAATGAGACATCTAGAACTGCTGTGACAAAAGTAGTTAAACCCCCAGCGAATGTTACTTGTGCTGATTGTTCGGAGAAATTTGCCACGAACAGAGCTTTAAGAACCCATGTTAAAGCTGTCCATAACAAATCGTACTATGAGTGTGAGCTATGTGATCAGACTTATACAACTTGgtactatttaataaaacactATAACACTGTCCATGACCTGGAAAAATGCAAATATTGCGAGCAGATCTTTCCGTTAAATGAATTCATGCAACATTTAAAGACTGAACATATAGATTTGGTGTTCCCATGCCGATTCTGTGACCTGGTTTATTACTCGTCAGATTCTTTAGTGACGCACTTCCATGTCAGTCACTTGGTAAATACCAATGAAGTGCAGCCTCAATGTGTAATGTGTCTGAAAGATGTAAATCCAGACCAGTTGAAATATCACAGAATTAGATGCCGATTCTCATGTGTGGAGTGCTCTGTTATGCCATGCATACATTATAAATATCTGGCATCTTATAGAGAGCAGGttctaaataaagtaaaaaaaattaaatgcttgGACTGCGATTACACATTTTCTTCTAAATTAACCTTAGTCGGTCATATTAACCAAGCACATCTTGATCATCATCCATTCACTTGTGACCATTGTCAACAACAGttctattcaaaattaaaattgaagacTCACATAGTACTGTTCCATTTGGATAATAGATGTGAATACTGTGATGTAGTTTTCACTTACATAGTTGGTTTGGAAAACCACAAAAAGCGGTGCAAAACTAATGTTAGACCATTCGGCTGCAGCAAATGCAAAGCTTCATTTGATTCGGAGGAAAATTTAACAAGTCACGACGCTTTGAGGCATAATGAGAATGTATATATCTGCGGCCATTGCAGTTGCACATTTTTGGAGTATACTGAATTGGAAGAACATATTGAAAGAGAACACAGCGGCGTTCTAAGACCaggagataaaaaaaaacgtatgtgTACGAATCATGTGCATTGTTCCCTATGTGATGTAGAATTAAAAAGTATTGAAGAATTAAATCAACACCAAAAGTTACATAGCCACACAGATAAATTTGCGTGTATAAAGTGCGACCAAATATTCGGCAACCTATCGCTATTGTATTCACACAATCTAAAGcacaagataaataaaacagttaattgcaagtattgtaataaaaagatGCAAGGTTCGCGACACCGAGAGCATGAggcttattgtttttataatagcaATAAGAAGTTGAGCCTTGTCTGTGAAGAGTGCGGCCAGGCATTCAGTACTAAATCAGCTTTAATACGCCATGCTGAAACACACATGAAGAAAAAGCCATGCCCCGAGTGTCAGAAGCCCACAAGGGATCTTAAAAAACATATGCGTTTAGTGCATGGCCCAAGGCAGCCGAGGCGAAAACGGCATGTGACGCAATTTCGATGTACGGTTTGTAATCACACTGTCCAAGCTAGAAGAGCTCTAGATGCTCATATGAATCGTTTTCATCTTAAAATCAAGCCATATTCTTGCAATGAATGTGGGCAAACCTTCTTCGGTGAAAATAGACTGACGTCTCACATGCTAACTCATACAGAGGAGAAAGTGTGTTACTGCTCTGTTTGTGGTAAAAGATATTCTGACCCGGTGTGTTTGAAGAGACATTTCAGGACACATACGGGTGATTTACCTTATTGTTGTGACCTTTGTGGTGAAAAATTTAGAACTTCGTCATTGATGAATGTTCATCGCTTGAagaaacattttgaaaaaacgATCAGTTGCCCGTTTTGTGATAATATGTTCCATGTACTGGGGGAAATGAGGTCACACTTCAGATCAGTGCATTGGAAAGTTAAGGATAAGCCGTTCGATGTGCGAGAAGTAAGAGGATTGTCTGAGGAACATTATCATCTATTTGAAGATCGTAGGTTTCCGAAATTGGAATGA
- Protein Sequence
- MDELVSTTTSDQDYYDYVKLKLKSVCLSAKFCGLCLQSEGDLHPLDLQFIINNQKYTKCLHDILNYVFNDDIKNLTSSSYVCKICTNKVMQCYTFIHNVKQTLRLMDNCVDDMSTKIDYIHNQFDTTFDLDTSVIIAADTDNKDLYYSIINTDRIEILPIVYPRIVEEQDLKKYNFKSSTVKVNTIKKKVGRKRKYLPTDTFPCKICPKVFAVYKRLARHEREVHSQVWTCDLCDQYFTSKREFKAHYKTHDQEKAYMSKSSVEKLAISSQTPKVDISEIRLTNETSRTAVTKVVKPPANVTCADCSEKFATNRALRTHVKAVHNKSYYECELCDQTYTTWYYLIKHYNTVHDLEKCKYCEQIFPLNEFMQHLKTEHIDLVFPCRFCDLVYYSSDSLVTHFHVSHLVNTNEVQPQCVMCLKDVNPDQLKYHRIRCRFSCVECSVMPCIHYKYLASYREQVLNKVKKIKCLDCDYTFSSKLTLVGHINQAHLDHHPFTCDHCQQQFYSKLKLKTHIVLFHLDNRCEYCDVVFTYIVGLENHKKRCKTNVRPFGCSKCKASFDSEENLTSHDALRHNENVYICGHCSCTFLEYTELEEHIEREHSGVLRPGDKKKRMCTNHVHCSLCDVELKSIEELNQHQKLHSHTDKFACIKCDQIFGNLSLLYSHNLKHKINKTVNCKYCNKKMQGSRHREHEAYCFYNSNKKLSLVCEECGQAFSTKSALIRHAETHMKKKPCPECQKPTRDLKKHMRLVHGPRQPRRKRHVTQFRCTVCNHTVQARRALDAHMNRFHLKIKPYSCNECGQTFFGENRLTSHMLTHTEEKVCYCSVCGKRYSDPVCLKRHFRTHTGDLPYCCDLCGEKFRTSSLMNVHRLKKHFEKTISCPFCDNMFHVLGEMRSHFRSVHWKVKDKPFDVREVRGLSEEHYHLFEDRRFPKLE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -