Hpro035880.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990156.1:735206-742667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.6e-06 0.00026 22.4 0.4 1 23 93 115 93 115 0.97 2 10 2.1e-05 0.0021 19.5 4.2 1 23 120 142 120 142 0.98 3 10 1.2e-05 0.0013 20.2 3.0 1 23 149 171 149 171 0.96 4 10 0.00012 0.012 17.1 2.4 1 20 177 196 177 198 0.95 5 10 9e-05 0.0092 17.5 2.5 2 23 210 231 209 231 0.97 6 10 2.8e-05 0.0029 19.1 1.7 1 23 237 259 237 259 0.97 7 10 1.3e-05 0.0014 20.1 0.1 2 23 266 287 265 287 0.97 8 10 1.5e-05 0.0016 19.9 3.7 1 23 293 315 293 315 0.98 9 10 7.6e-05 0.0078 17.7 1.7 2 23 322 343 321 343 0.97 10 10 0.00012 0.012 17.1 2.5 1 23 349 372 349 372 0.95
Sequence Information
- Coding Sequence
- ATGATATCTAGAAAGCGAGATGCTTGGGTCACCATCAGCCATGAGTATAACGCCATCGCTGTGAGCGGAGTCAGGACGTGGCAGCAAATGAGGCACTTGTACGAGAATATTAAACAGAGGTCCAAGAAGGTCCCTAGGAAAGGTACTCAAGACTCAGATAGTTGTGGATATAAAAGTCCTACCGAATCTGACGGTCAGacgtcagcacctgcaccagaaCAACCTTCTGACCTATATGATGAGGCTGCTGTACGTATTGGTTCACTAGAAGACGGCTACTTCTGCCAAATATGTACGAAGAAGTTCGCAAACCCGGGCAACGTGCAGCGTCACATGTTGATCCACACAAAAGAAAAACACACCTGCTCCGAATGTACTAAACAATTCTATTCTTTAGAACAACTACAGAAACACATGAACCGACACACCCCAGCGACTCGAACACACATTTGCGAATACTGCCAGAAAGCGTTCAAATCAACTTCTAACTTAATGCAACATAAAAAAGTCCATCTCGAAGTTAAACCTTACTTCTGCACTCAATGTCATAGATCCTTCGCGTTCAAAGCTAATTTAACTAAACATCAAGGAAAATCTCGCTGCAAACGGCCAATCGACGAACCTATACAATGTCATGTGTGCAATAAAATCTTCGACAAGGAGTTCTTACTAAAAAGTCATCTACGTAGACACGATTCTGGCAAACCATTTTCGTGCGATCAGTGTACTAtgtcttttaaatataaaagcacTTTGATTCGTCATGTGCAGCTTCATAATGGGGTACGACCTATAGTCTGCCCGGTTTGCGATAAGGCTTTTACACACTTGGCATTATTGAAGCCACATATGCGAGTCCATACTGGTGAAAAGCCTTATACATGTCCAGTCTGCAACAAAGATTTTGCTCATAAGCATAACATGCAGAGGCACGCGCTTCGTCAcgaaaagaaaaagcatttggTTTGCGATGTTTGTCATAAAAAGTTTCCGAAAGAAAGTCGACTTATTTATCACATGAAAACGCATGTCAATGAGAAGTATTTTGCTTGTAGTATTTGTCCCAAGAGGTTTTCTCATAGACAGAATATTATTCGCCATTATGAGAGAAAGCATCCACATGCTAAGTATGAAGCAACGGCAATTCCGCGCGAAATCGACACGATTCGAGTGATTGAAGAAGTGAAACACGAACGGTGCCTATGGGATCCTACAgatgaatattataaagtaaaacatGCAAGAATTAACGCCTGGGACAATATCGTCGATATACTGTTTGGAAAAATTTCGCATAATAAGAAGAAGTATTTAGtaAAACAAATCCAACAAAGATGGAAAACGGCAAGAGACGCATTTTTCAAATCGATGAAACAGCATTCGTCTAAAAAATACATCTACTGCAAAGAATTATCATTCTTAAATAATACTCCAAAAGAAAATACTGaagaaattaatgataaatcTGATGATAGAAATGTACCTGTTGACACCAATATACATAATGACAAAGTACACGATGACGAAAATGTACCTTCTAACAACAATGTACCTTCTGACGAAGCATCAAACGCAGGTGAAACTACTAACTCTCAAGcggaaaataaatcatttgaaagACCAAGAACTCGcaagagaaaaaaaatcaaccaaCCAAGTTCGTCCCAAAAAGAACTTGCTAATTTTCAATCGGAAAGTCTTGATAGTGACGATATAGCGTTTTTTTCTTCACTCGGACCAATTTTGAAGACATTTAACTTACAGCAGAAGATAGAATTTCGTTCTAGAGTTATGAGCGGGGCAATTCTGGTCGACAACATGTCAAAATCGCGTAAGAAATCTACGAAAACTTCGTCTGAGTCATCTGTTGACTAA
- Protein Sequence
- MISRKRDAWVTISHEYNAIAVSGVRTWQQMRHLYENIKQRSKKVPRKGTQDSDSCGYKSPTESDGQTSAPAPEQPSDLYDEAAVRIGSLEDGYFCQICTKKFANPGNVQRHMLIHTKEKHTCSECTKQFYSLEQLQKHMNRHTPATRTHICEYCQKAFKSTSNLMQHKKVHLEVKPYFCTQCHRSFAFKANLTKHQGKSRCKRPIDEPIQCHVCNKIFDKEFLLKSHLRRHDSGKPFSCDQCTMSFKYKSTLIRHVQLHNGVRPIVCPVCDKAFTHLALLKPHMRVHTGEKPYTCPVCNKDFAHKHNMQRHALRHEKKKHLVCDVCHKKFPKESRLIYHMKTHVNEKYFACSICPKRFSHRQNIIRHYERKHPHAKYEATAIPREIDTIRVIEEVKHERCLWDPTDEYYKVKHARINAWDNIVDILFGKISHNKKKYLVKQIQQRWKTARDAFFKSMKQHSSKKYIYCKELSFLNNTPKENTEEINDKSDDRNVPVDTNIHNDKVHDDENVPSNNNVPSDEASNAGETTNSQAENKSFERPRTRKRKKINQPSSSQKELANFQSESLDSDDIAFFSSLGPILKTFNLQQKIEFRSRVMSGAILVDNMSKSRKKSTKTSSESSVD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -