Hpro035190.1
Basic Information
- Insect
- Hypena proboscidalis
- Gene Symbol
- -
- Assembly
- GCA_905147285.1
- Location
- LR990155.1:4314764-4320588[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00036 0.037 15.6 0.9 1 23 10 33 10 33 0.95 2 17 0.011 1.1 11.0 2.0 2 23 64 85 63 85 0.96 3 17 0.066 6.7 8.5 2.8 1 23 106 129 106 129 0.97 4 17 0.00079 0.08 14.5 0.7 1 23 134 157 134 157 0.94 5 17 9.4e-05 0.0096 17.4 2.9 1 23 162 185 162 185 0.98 6 17 3 3e+02 3.3 0.2 2 23 191 213 190 213 0.87 7 17 8.4e-05 0.0086 17.6 3.9 1 23 221 244 221 244 0.98 8 17 0.00021 0.022 16.3 1.5 1 23 250 272 250 272 0.98 9 17 0.077 7.8 8.3 0.2 3 21 365 383 363 386 0.87 10 17 2.6 2.6e+02 3.5 0.6 3 23 410 431 408 431 0.88 11 17 0.00055 0.056 15.0 0.0 1 23 437 460 437 460 0.94 12 17 2.2e-05 0.0023 19.4 0.6 2 23 466 488 466 488 0.97 13 17 0.0023 0.23 13.1 0.9 2 23 494 516 493 516 0.96 14 17 0.0015 0.15 13.6 1.9 1 23 523 546 523 546 0.96 15 17 0.00038 0.039 15.5 0.4 2 23 553 574 552 574 0.93 16 17 1.7e-05 0.0018 19.7 5.6 1 23 580 602 580 602 0.99 17 17 1.4e-06 0.00014 23.2 1.3 1 23 608 630 608 631 0.96
Sequence Information
- Coding Sequence
- ATGCCGTTCAGAAAGAACGGCAACACGTATAGATGTTTCTACTGCGAAACTAACTTCTATTACGCGTCCGAACTCAGAGCTCACACGATCAACGATCACAAAAACGAAACGAAAAGGCAGTTGAAGCAAACTATCAACAGAAACGTATGCATGAAGAATCTACTCGTGAAAGTGGACATCACTGATCTACGATGCAAAATTTGTTCGGAAAGTTTCGACACTCTAAAAGACCTAACATTCCATTTTCGGAAACACGACAAATTCGTCACTGAGAATTTGGACAACATGTTGTGTCTAAAACTATCGGATAATGAATTCAAATGCTTGTATTGCGATGAAGaatttggcttttttaaaaCTCTATACATCCATTTACATCGTGAACATGTCAAAAGGAAGTTCATATGTGAAAGCTGTGGAATCAATTTTACTACAGCACAGGGCTTAAAACATCACACGCTATACGTCCACGAACAAGGGGACTTTAAATGTCCTTTTTGCGATAAAAGTTATGCTGCGCAACATCTTCTGCATGCTCATATAAAACGGTCTCACGATACGGCAAACTTAAAATGTCACGTTTGCAACGCTGTACTTGGTAGCGTAGCCCAAAAGGAGACGCATTTGGCGAAAGAGCACAGTATTTGGTTAACGAAAGAGTTTAAATGTGATAAGTGCACGAAAGGTTTCAAGTATAATCACATGTTGGTTCGACATGTTAAGAGAGTTCACTTAAAAGAGAAGAATTTCACTTGTGAAAAATGTGGCAACAAGTTTTTTGACAAGAAGTTGTTAGAGTTGCATCAAATAAGACACGAGGAACTAACGCTGTTAGCCAACGAGAAATGCGCCGAAAGGGAGTGGAAGAACGACCTAATCCGATTCCTCACCGTTGTCCTTGAAAACTCAAGTATCATGCCGTTCCGATTCGCAGCCAACAAGTTCATGTGTTTTTTCTGCTGTTGCACTTTCACAGACAGTACCAAATTAAAGGAGCATACGCTAGACGAACACAAAGACGCTAAGTTGCCACGAATTTTAAGAACCCTCCTAGGAAATAGTCGTGTGAAGCTAGACACGGCAGAAATCAACTGCAGAAAATGTCCAAAAGGTTTCGATACATTAGAATCTTTCCTAGATCACGCTGCAGACACTCACGAATTTAAATTCAAGAAAGATATAGccaattctatttttatttttaaattatctgatGAAGGAATGACTTGCATTGAATGTGGAGAGGAGTTCCGATTCTTCGGACCCTTATTGAACCACGCTCACAAATTCCACAATAAATGTAAGTCGTTTCTTTGTGAAATCTGCGGCCAGGGTTTCGTGGCGAAATCTAACGTTGTCAGCCACATTAGAAATGTACACACGccaaaaaatagacaatgtaCTAAATGTGATATGGTGTTTAAAAACTCGTACGCTTTGCAACTTCACAGAGAAACAATTCATCTAAAACATTATTTGAAATGCACAAAATGCTCTGAAGTTTTTCCGTCGCAGTACAAAAAGAAACAGCATTTAGCGACTGTGCATAATGACGAAAAACTCCAATTCAAATGCGATGAGTGTGAGCGATTCTTTACAATGAAAAGTAGACTGGTCGAACATAAATTAAGGACACATGAGAAACAAAAAAGTCTGTCTTGCGAAATTTGCGGCTTTAAAGTATTTAGTAATGATTTGCTAAAGCGACATATGGTCCGGCATGACGATTCTCGGCCGTTCCAATGTGAGTACTGCAAGAAATGTTTCCAGAGAAAGAAGACTTTGGAAATCCATACAAGGATTCATACAAACGATAGAAGGTATGTGTGTAAGGAGTGCGGAAAGGCGTTCGTTCAGGTGACCAGTTATAAGCTTCACATGAGGGTCCATCATGGTGGTAATGAAGCCCCGTCTGCGTCGTGGACGTGA
- Protein Sequence
- MPFRKNGNTYRCFYCETNFYYASELRAHTINDHKNETKRQLKQTINRNVCMKNLLVKVDITDLRCKICSESFDTLKDLTFHFRKHDKFVTENLDNMLCLKLSDNEFKCLYCDEEFGFFKTLYIHLHREHVKRKFICESCGINFTTAQGLKHHTLYVHEQGDFKCPFCDKSYAAQHLLHAHIKRSHDTANLKCHVCNAVLGSVAQKETHLAKEHSIWLTKEFKCDKCTKGFKYNHMLVRHVKRVHLKEKNFTCEKCGNKFFDKKLLELHQIRHEELTLLANEKCAEREWKNDLIRFLTVVLENSSIMPFRFAANKFMCFFCCCTFTDSTKLKEHTLDEHKDAKLPRILRTLLGNSRVKLDTAEINCRKCPKGFDTLESFLDHAADTHEFKFKKDIANSIFIFKLSDEGMTCIECGEEFRFFGPLLNHAHKFHNKCKSFLCEICGQGFVAKSNVVSHIRNVHTPKNRQCTKCDMVFKNSYALQLHRETIHLKHYLKCTKCSEVFPSQYKKKQHLATVHNDEKLQFKCDECERFFTMKSRLVEHKLRTHEKQKSLSCEICGFKVFSNDLLKRHMVRHDDSRPFQCEYCKKCFQRKKTLEIHTRIHTNDRRYVCKECGKAFVQVTSYKLHMRVHHGGNEAPSASWT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -