Hcor117932.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- zfh1
- Assembly
- GCA_030762935.1
- Location
- CM060900.1:538528209-538540072[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.5 2.1e+02 5.3 0.1 2 23 9 30 8 30 0.95 2 16 2.3 9.9e+02 3.2 3.0 1 23 688 711 688 711 0.95 3 16 2.6 1.1e+03 3.1 3.3 1 23 754 777 754 777 0.96 4 16 0.17 73 6.8 0.3 1 23 864 887 864 887 0.85 5 16 0.0013 0.56 13.4 1.2 2 23 896 917 896 917 0.97 6 16 9.8e-06 0.0042 20.1 5.1 2 23 920 941 919 941 0.97 7 16 1.7e-05 0.0073 19.4 1.5 1 23 947 969 947 969 0.98 8 16 3e-06 0.0013 21.7 2.5 2 23 976 997 975 998 0.95 9 16 0.28 1.2e+02 6.1 2.1 6 23 1012 1029 1010 1029 0.96 10 16 4.3e-05 0.019 18.1 3.2 2 23 1035 1057 1034 1057 0.97 11 16 0.0012 0.52 13.5 0.2 2 23 1073 1093 1072 1093 0.97 12 16 1.3e-05 0.0055 19.7 2.5 1 20 1099 1118 1099 1121 0.92 13 16 0.0028 1.2 12.4 0.9 1 23 1129 1151 1129 1151 0.98 14 16 0.0095 4.1 10.7 6.2 1 23 1157 1179 1157 1179 0.98 15 16 1.8e-06 0.00076 22.4 4.0 1 23 1185 1207 1185 1207 0.98 16 16 0.0014 0.61 13.3 7.6 1 23 1213 1235 1213 1236 0.96
Sequence Information
- Coding Sequence
- ATGGAGATGCGAGGGGGTCCAGTATCGTGCCCAGTATGCACCCTGTACCTGCGAGAAGGTGTAACATTGCAAAATCATCTGAATACACATCCAAAGGATCAAGTAATTGCAGCATTGGTGAAAATTTCTTCTGGGGATTTGAGATACAAATTAGCAACAGCTGCTGTAGCAGCACCATCTTCAAGTCAGGAATTGCCGGTGCTTGGTCGTTCCACCCCTTCGGTTTCAGCCCAGTTTTCTCAACCCAGCAGCAGTCATTTCACAACTGCTATTACATATCAGCATTTTCTGAGCAGCAATGGTGTGCCACAGTATGTTCCATTGCCAGCTGTTATCGCAGAGACAACAACAACCCCAGCTCCAACTAACCAAACCTCAATTTTGCAAATGGTATACCAGCCATATATGATGCAACAGCAGCAACAGTTGCAACTGTTGAATTCAATCTCTCCTCCACCTCAAACCTACATACGACATGTACTGACACCTTCAGGTATTTTTTCTCCATCAAACATCAACACTCAAGCAGTAGAGCTTTCTCCTGCATCCCTTACCATCAATATTCCATTTCAAATGGATAATGTTGCCACAGAATTTCCTGCTACATCGGAACCACCAACATTTCAAACTACACTGGCTAATAATACAAATACACCACTAAGCTCTACCTTACCTATAGTCAGTGTCGCTTCAACTTCGGTAATTCCTTGCAGCACTGCTGCTGTTGAAGTACTTAATGAAAACATGCCAGAAGTAGGCGAGAGTGAAACCTCACATGAAGATACCAGTGTGCCCAGTGTCCGTGATGAAGAGCAGCAGACTGAAGGATCTAGTTTTTCAAATGACCAAAATGGAGAGAGTTATGACATAGGAATGGATGATGACACTACTACCATTGCTTGTGTCGCTCCATGCCGTGAAGGAAAGGATGAAACAACTCAGACAGTTGATTTAGATGATGACTATAGAGATGATCTACAGAATATTAAAGGGCCTTCTGATTCAGAAAAGGACAAAGGTGACAGTGAAAACGAAAATGCTAATGATGAGACTGATCCTTCAGAGGAAACTACTACTGAAACTGAACATGCTAATGAAACCCAGAACCATAATGAAACTCAGTATACTAATGAAACTCAAACTAATGATACTGAAATGGAAaatgcaaatgttgatgaaaataaTGAGAGTGATGTtgaaagtgacagtcaaaacaaACTGCATGTAGTTCCTGAAGAGAAAATAGTTCCATCGGGCATTCCATTAATATCTGAAAGTGGTTCAGCTATGCTGGCAGAAGACACAAATAATGGAAATGCTGAATGTCCAAGTAATGCAAATTCATCAATCAGCAATGTGACAAGTGATATGGTTCAGATCTCAGGATTGGTTAGAAATGCTCTAGAAATTCAGCCCCCTGTAGTGAGGGCTGAGAATGATGGTGAATACATATTGAGTGAATATCAAGAACAGATTAACAATCCAGACAATCCATTTCCAGGAACTCTTCAGAACTCTGGCAGTAATGCACAGGGACAAAATTCAGAAACCTCTAATTTTATAAATGCTAAGCCTCCAGATGCATATACTATATTTAACATAGATGGTTTGCAAATTGCTGTGCCAGATGGTCTTGTACAGGCCTCTTCATCTTTAATTATAGCACCAAATGAACCCACAAGAGTTGCTGAAACTCTACAAACTACAGAGCAGTGTGATGCAGGTTTCTCCGGTGAGACAGTTTTAAACATTCACACTGATGAAACAATGCCACCAAAGGGAGAGCTATCAGAGCAGGAAAGTGTTGGAGGGAATGACACTTTCCCATGGACTCAGTCATATGATGGCCCAACAGCATGTGACCTGCTTGCAAGAGAGAGCTGGGAAGCTTCTGATGGCTCTGATATCTCTGATGTCGATGTAACAGGGGACAGTGACTCTATGCCATCTGAACCCCACCAAGAGAGCACAACATATCCACTCAAGATAGAAACGGTTAAGCAGGAAAAGATGTTGCCACTCAAACTGCAGCTGATAGAAAGGTTTAAACAGAAAATGGAATATGCATGTGGTGTGTGTGATGAGAAATTTATGTGTCCTAAAGAGCGAAGGGTTCATCAGAACACCTGCCATGGCAATGTTGGAGAGAGTACTGCAGCATCGATGGCTACAGAAGAGCCATCAGAACTCCTCCAACAGAGTACATGTCAACTGCCACTCAAACTGCAGCTGATACAAAGGCTTAAACACCAAAGGCTATATGCATGTGGTGTTTGTAATGCAAATTTTAAGTGTCCTAAAGAGCGAAGAGTTCATCAGAACACCTGTCATGTCAATGTTGGAGAAAGTAATTCAGCATCAATGGAAACAGAGGAAGTATCGATGGTTACTGGAGAAATAGCCATGGAAATGGAGACGAAACCAAACTTAATAAGTACAGTGATTGTAAATGCACACAGCGTAGCTAAGGGAACATCTTCCATTACAGAAGCAACTGAAGGTAAAGAGACAAAGAGGCTGGAAGAAGAATCAATGGTTGTTGAAATTTCAAAAGCAAAAACTACAAAACAGAGGAATTCTACACATGGTTATTTATGTTCAAAATGTCCTGAAATGTTCTCCAGTTTGAAGTTGCGAGCAGCTCATGAAAGCCAGACACATCAAATTACCAAAgatgtaaaaaatgtatgtaaaacatgcaataaaacatttgaaaactatttgagtttCAGAGAACATCTGCAGATTCATCCATTAGAATGCTCACACTGTGGTAAATGTTTCAATCGGCGTCAGAATCTTGATTTGCATATCAGGAGACACCTGGACATCAAGCCCCATAAATGTACTTTATGTGACAAAGCATTTGTGACAAAACAAAAATTGGCAGAACATATAAATTCGCACACAGGTAATTCTCCTATAAAGTGTCCTATGTGTGATGAGACCTTCAGACGTTACAGTAACCTGATTCAGCACAAAAACCGGCATCacttaaaaaagaagaagaaaataaaggattttATTTGCCGTTGTGGTgaaatattccattcaaaaaagaaattggaATGGCACAAAGAGACTCACGACATCAACCCAAAACGTTGCAAGTACTGCACAGAGAGATTTGTGCATGTTTCTAGCTTGACAAGGCACATTCGCAAAGCACATGACTGCAGGTATGTTCCAGATGGTGGCCGCATATCAGAGAATGTAGAGTGCAACATATGTGGCTTTGTGTTTCTCAAAGGTTCAATGCAAGTGCACATGCGAATGCACAGAGGAGAAAGACCTTTCTCATGCCATGAATGTGGCAAAGATTTCACAACAAAATGGAACTTGCAGTCACATCGGTGGACACATGCAGCACGCAGTGCAAAGCCGTACAAGTGTAACTTATGCAAAAGTGCATTCTTTCGGTTTGCAGATCTCACAGCTCATGAAAATTCACATCGTAATGTGAGACCTTACACATGCAATCACTGTGGCAGTCGATTTATTCGCAAATACAATTGTCTCCGACATGTACGTGAGCACGAAACAGGGAAAACTTTCAGATGCACAGTATGTGGAAAAACATTTCATCGCAGTTACTACTTAAAGGAGCACCTTAGAGTGCACACTGGCATCAGACCTTTTACTTGTCACATTTGTGGAAAGTCTTCCACAACCAAGTCAAACCACAACAAGCATGTAAAAATTCATCATGCACGTGAGCAAGTGAACACAGAAGGTTAA
- Protein Sequence
- MEMRGGPVSCPVCTLYLREGVTLQNHLNTHPKDQVIAALVKISSGDLRYKLATAAVAAPSSSQELPVLGRSTPSVSAQFSQPSSSHFTTAITYQHFLSSNGVPQYVPLPAVIAETTTTPAPTNQTSILQMVYQPYMMQQQQQLQLLNSISPPPQTYIRHVLTPSGIFSPSNINTQAVELSPASLTINIPFQMDNVATEFPATSEPPTFQTTLANNTNTPLSSTLPIVSVASTSVIPCSTAAVEVLNENMPEVGESETSHEDTSVPSVRDEEQQTEGSSFSNDQNGESYDIGMDDDTTTIACVAPCREGKDETTQTVDLDDDYRDDLQNIKGPSDSEKDKGDSENENANDETDPSEETTTETEHANETQNHNETQYTNETQTNDTEMENANVDENNESDVESDSQNKLHVVPEEKIVPSGIPLISESGSAMLAEDTNNGNAECPSNANSSISNVTSDMVQISGLVRNALEIQPPVVRAENDGEYILSEYQEQINNPDNPFPGTLQNSGSNAQGQNSETSNFINAKPPDAYTIFNIDGLQIAVPDGLVQASSSLIIAPNEPTRVAETLQTTEQCDAGFSGETVLNIHTDETMPPKGELSEQESVGGNDTFPWTQSYDGPTACDLLARESWEASDGSDISDVDVTGDSDSMPSEPHQESTTYPLKIETVKQEKMLPLKLQLIERFKQKMEYACGVCDEKFMCPKERRVHQNTCHGNVGESTAASMATEEPSELLQQSTCQLPLKLQLIQRLKHQRLYACGVCNANFKCPKERRVHQNTCHVNVGESNSASMETEEVSMVTGEIAMEMETKPNLISTVIVNAHSVAKGTSSITEATEGKETKRLEEESMVVEISKAKTTKQRNSTHGYLCSKCPEMFSSLKLRAAHESQTHQITKDVKNVCKTCNKTFENYLSFREHLQIHPLECSHCGKCFNRRQNLDLHIRRHLDIKPHKCTLCDKAFVTKQKLAEHINSHTGNSPIKCPMCDETFRRYSNLIQHKNRHHLKKKKKIKDFICRCGEIFHSKKKLEWHKETHDINPKRCKYCTERFVHVSSLTRHIRKAHDCRYVPDGGRISENVECNICGFVFLKGSMQVHMRMHRGERPFSCHECGKDFTTKWNLQSHRWTHAARSAKPYKCNLCKSAFFRFADLTAHENSHRNVRPYTCNHCGSRFIRKYNCLRHVREHETGKTFRCTVCGKTFHRSYYLKEHLRVHTGIRPFTCHICGKSSTTKSNHNKHVKIHHAREQVNTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -