Hcor010473.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030762935.1
- Location
- CM060882.1:66639376-66675921[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.003 1.3 12.3 5.3 2 23 121 142 120 142 0.95 2 13 0.0049 2.1 11.6 5.9 1 23 148 170 148 170 0.93 3 13 0.00079 0.34 14.1 0.9 1 23 176 198 176 198 0.96 4 13 2.6e-06 0.0011 21.9 1.5 1 23 750 772 750 772 0.98 5 13 0.016 7 10.0 3.8 1 23 824 846 824 846 0.98 6 13 8.6e-06 0.0037 20.3 2.7 1 23 852 875 852 875 0.96 7 13 0.0002 0.084 16.0 3.0 1 23 899 921 899 921 0.98 8 13 2.6e-06 0.0011 22.0 1.3 1 23 927 950 927 950 0.97 9 13 0.0002 0.084 16.0 2.0 1 23 956 978 956 978 0.97 10 13 6.2e-06 0.0027 20.7 1.1 1 23 984 1006 984 1006 0.97 11 13 0.00041 0.17 15.0 2.4 1 23 1012 1034 1012 1034 0.95 12 13 1.5e-05 0.0063 19.6 5.0 1 23 1040 1062 1040 1062 0.97 13 13 5.5e-06 0.0024 20.9 1.6 1 23 1068 1090 1068 1090 0.98
Sequence Information
- Coding Sequence
- ATGCCAAATGGAGCTCAGTTCTGTTTTCTGATGAGTTGCGATTCAATGTGGAATCTGATAGTCAACTTTATCTCATCTGGAGGGAACGAGGGAAACAACCCAGCTTTTGTACAAGAAAGATCCCCATATAGCAGTGGTGTGTTGATGGTGAGGGCAGGAATCAGCTTGGGTGGACGTACAGACCTCTACATCAACGCAGATGGTACTTTGATGAGATTCTCCGACCTTTTGTTGTGCAACCAAACATCTCTGACTTCATTCAGAGTGTTTCAACAGGCACAGAGCGCATTGAGGAATTTGTACGAGCCAATGGTGACCATATCCTCACGAATACCTGAAACTGTTGACTGGATTAAATCACAATGTAATATTTGTGGTAAGAAGTTCAGTTGCAAGAGTACACTTAAGTCCCATCATGTTGTCCATACTGGTGAAAAGCCATTTACCTGCCACATCTGTGGTAAAAGTTTCTCACAAACAGGACTGCACTACCATTTACAACATGTACATGCAGGAATCAAGAATCACTGTTGTGATATATGTGGACGAAGTTTTGCAGCAAAACCAGCTATGGAGGACCATCGGCGCATCCATACAGGCGAGCGTCCATATTTGGCTTTTAAACAAGCCCGCGCACGGGCCCGtcgcattattcaggatagcaaacgggcttcctgggcttcgtttgttgccACCTTCAACAGTTCAATGCCTTCTTCGGTTGTCTGGGAAAAGCTACGACGTGCTGCCGGTAAACAGGCCAACACTTCCATACCAGGACTTCACGTGGGAGCTGCTACAGTCGTCGATCCGGTAGCTGTTGCTGACGTCCTTGGTAGTACGTTCGCGTCTGCCTCTAGCTCCGAAAATTATGCTCTAGCTTTTCGTACTACCAAGGCTGAGGTGGAATCTGAGGTTCTCTCCTTTCGCTCTTTTAACAATGAGTGTTATAACTCGATTTTTAGCATCCAGGAGCTTGAAAACTCCCTTTCGTCCTCTAGTCTCACTGCTCCCGGACCAGGTGGTAttcatatcgccatgctccaGCATCTTTCTCCTGCCGGCAAACTCTTTCTCTTATTTCTATACCACCGCATTTGGTGCGATGGAGTGTTTCCTGCAGTCTGGCGCGAGGCCACCATCGTCCCAATCTTAAAACCTGGTAACGATCGCCATctaccttccagctatcgtcccaTCTCCCTCACCAGTTCCCTATGCAAAGTGATGGAGCGTATGATTAATGGGCGATTGCGATGGTGGCTCGAATCCCAAAATCTGTTTGCCAGCGTCCAATGTGGGTTCCGTCGTTACCGTTCTACAGTCGATCACCTGGTCGCACTATCCACACACAACATGGATGCCTTTTTGCGGAAGAGTCAGACTGTCGCGCTATTTTTTGATCTGGAAAAGGCGTATGATACCTCTCGTCTCAATACGACACATCACCGTGGTATCCGTATGAGTATTGGCGCCTTTCCCACGGGCCCAGTTCTTAGCCTTTGTGCGGAAGCTGCCGAACCTCCGCTCTCTTACCGCCATGATGTCCTCCTTGCAGTTATGCCTGTAGCCTTCTTAGTTTACCCGGACATCCGTCTTTTACCTGTTTTTTTAACGAGTCTTTGGATCGCCGATACTCGAGTACCTCCCTGGCCTTACTCCCGCCTGGTGTTCGCCTTCGGCTGTTGGACGTCACTTTACCGCCACTCTATTCTGGAGGGGAGACTCTTTTCCCCCCGCGACTCCACCCTGAGATACTTGTTGAACAAGACCGAAAGCCTGAGATTGCTGTACAGCCCCCATCCCGTTGTACAGCGTGTCCGGGATTGTCTCCATTCGCTTGCCGAATCGCTTGTCGGCATAGATGGCAATGAGGCTGCTGACGCCGCTGCGAAGGCCGCCATTTCAGCCCCCATGTGTTCTAACGCACCTGTGCCTTCTGGGGATTTACGCGCTTTTTACCAACCTCTTGTCCTTTTGCGTTGGAATTCTGCCTGGGCCGATCTGCAGGGGAATAAACTTCGGGTGGTGAAGCCTCTCCCTGTCGCCTGGAATACCTCCTCTCGCGCGTGGCCTGCACAGTCTGTGACAGCCTTCAATGCTTTCCCTGACAAGCAGAATCTGCGCAGAGCTGAGCAAACAACAGAGCATATAGATGTAAAGACAGAAGAACCCCCAGACTTTGCCATTTTCACTGGAAGAGATATCCTCCAAAAGCCGGAAAACAGGAAACAAAAATGTTCAGAGTTTGAGTGTGAAATATGCGGGAAGAAATACAGCAGGAAATTTGACATGCTGAAACACATGAAACTGCATACAGAAAAGTGTGATCATGTGGATCCAGCTTCTGATCAAACCAAGATTAGCTTAGGTAACAAAATCAAAGTAGAAGATATGGATGTTTCTAATATTGTAGAAGAGCAGGCTGCAATACCTGAGGCATGTGCTAAAATAGGTGGTCGTCGGATATTCTACTGCACACTCTGTGGTAAGCAACTCACCACACCTTACACATTCAAATGCCATCTACGGATCCATACCGGTGAGAAGCCCTTTACGTGTCATGTATGTGGAAAGCAGTTTCGAATGCGCACCTTGCTGATGCGCCACATACGAGATAGCCATGAGCGTGCACGAGCTAAAGAGCAAGATTCTGTATCTAAAGCACAAGTTGAGGTAGACGGTCGTCAGGTGTATCATTGTTCACAATGTGGAAAGCAACTTGTGACACGCTACAGCTACATTCGCCATCAGCGCATTCATACTGGGGAGAAGCCCTTTACCTGTCATATTTGTGGGAAACAGTTCAGAGTACAAGCCCTGATGAGACGTCACATACGAGAGGTTCATGAGCGCGTGCGAAATCATCCTTGTGACATTTGTGGAAGATGTTTCGCCAACAGCAATGCACGCAATGATCACCGTCGCATCCATACTGGCGAACGTCCATATGTATGCCAACTCTGTGGCAAAGCATTCAAGACCAAGGCATCactttttattcatacaaaattccACCAGGATGTTTTCCCTCACCCTTGCATGTTATGCGATAAACGTTTTAGACGTCGGCAGCAGCTAAGTATGCACCTGCTTCTTCACAGTGGAGAAAAACCTCATTCTTGCACTTATTGTGGCAAGAGCTTTCGGCATAATAAGACACTAAAGGATCATGTTcttatacacacaaacaaagataCATTCAAATGCAAGATATGTGACAAACTTTTTGCACAGGAACGGTATCTGAAGAATCATATAAGGAACCATAGAAAACAGGTTACCAGTAGAAGTTGA
- Protein Sequence
- MPNGAQFCFLMSCDSMWNLIVNFISSGGNEGNNPAFVQERSPYSSGVLMVRAGISLGGRTDLYINADGTLMRFSDLLLCNQTSLTSFRVFQQAQSALRNLYEPMVTISSRIPETVDWIKSQCNICGKKFSCKSTLKSHHVVHTGEKPFTCHICGKSFSQTGLHYHLQHVHAGIKNHCCDICGRSFAAKPAMEDHRRIHTGERPYLAFKQARARARRIIQDSKRASWASFVATFNSSMPSSVVWEKLRRAAGKQANTSIPGLHVGAATVVDPVAVADVLGSTFASASSSENYALAFRTTKAEVESEVLSFRSFNNECYNSIFSIQELENSLSSSSLTAPGPGGIHIAMLQHLSPAGKLFLLFLYHRIWCDGVFPAVWREATIVPILKPGNDRHLPSSYRPISLTSSLCKVMERMINGRLRWWLESQNLFASVQCGFRRYRSTVDHLVALSTHNMDAFLRKSQTVALFFDLEKAYDTSRLNTTHHRGIRMSIGAFPTGPVLSLCAEAAEPPLSYRHDVLLAVMPVAFLVYPDIRLLPVFLTSLWIADTRVPPWPYSRLVFAFGCWTSLYRHSILEGRLFSPRDSTLRYLLNKTESLRLLYSPHPVVQRVRDCLHSLAESLVGIDGNEAADAAAKAAISAPMCSNAPVPSGDLRAFYQPLVLLRWNSAWADLQGNKLRVVKPLPVAWNTSSRAWPAQSVTAFNAFPDKQNLRRAEQTTEHIDVKTEEPPDFAIFTGRDILQKPENRKQKCSEFECEICGKKYSRKFDMLKHMKLHTEKCDHVDPASDQTKISLGNKIKVEDMDVSNIVEEQAAIPEACAKIGGRRIFYCTLCGKQLTTPYTFKCHLRIHTGEKPFTCHVCGKQFRMRTLLMRHIRDSHERARAKEQDSVSKAQVEVDGRQVYHCSQCGKQLVTRYSYIRHQRIHTGEKPFTCHICGKQFRVQALMRRHIREVHERVRNHPCDICGRCFANSNARNDHRRIHTGERPYVCQLCGKAFKTKASLFIHTKFHQDVFPHPCMLCDKRFRRRQQLSMHLLLHSGEKPHSCTYCGKSFRHNKTLKDHVLIHTNKDTFKCKICDKLFAQERYLKNHIRNHRKQVTSRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -