Hcor044461.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060891.1:11701584-11712381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.03 13 9.2 1.0 2 23 147 169 146 169 0.92 2 14 0.011 4.7 10.5 0.3 1 23 174 198 174 198 0.94 3 14 1.2e-06 0.00053 22.9 0.4 3 23 206 226 205 226 0.98 4 14 2e-06 0.00085 22.3 5.2 1 23 233 255 233 255 0.98 5 14 0.01 4.4 10.6 2.3 3 23 263 283 261 283 0.91 6 14 3.6e-05 0.015 18.4 0.9 1 23 289 311 289 311 0.98 7 14 6.7e-06 0.0029 20.6 6.1 1 23 316 338 316 338 0.98 8 14 2.5e-06 0.0011 22.0 0.6 1 23 360 382 360 382 0.99 9 14 2.4e-06 0.001 22.0 0.9 1 23 388 410 388 410 0.98 10 14 0.0039 1.7 11.9 0.7 1 23 416 438 416 438 0.97 11 14 4.7e-05 0.02 18.0 3.2 1 23 444 466 444 466 0.98 12 14 4.9e-07 0.00021 24.2 0.7 1 23 472 494 472 494 0.97 13 14 0.00023 0.1 15.8 1.1 1 23 500 522 500 522 0.98 14 14 0.0014 0.59 13.4 2.1 2 19 529 546 529 549 0.94
Sequence Information
- Coding Sequence
- ATGGCACCACTGTCAGAGTGTGAGAAAGAAAGTGAAGAAACAAGTATTCTAAATGAAGATAGTGTGCATCAGAATTGCCAAGCATCCAGTATGGCACCACTGTCAGAGTTGGAAGACTATGAAGCACCTGAGCTGGACGTAAAGGAGGAGGAAGAGAATGATCCTGTAACGTGTGATCCAGAAACAGACTTGGAGGACAAAAAGGAGGTTGAGGCAATTGCAGATATTAGAGATTTATTAGTTCCCAAGGAATATAAAGATGAGGAGTATGATACTGCAGACGAAGTTAAAGAGGAGATTATAATGGATAATGAAGAAGATGAAATTAAGACAGTACTTTTGGTGAATGGTTATAGCGGTGCAGAAAGTGGTGAACAGAGCCAGTGCAGGTATTGTCGCCAGATTTGTGATGATCTGGAGACTCACTTACAAAGCAGTGTGTGTGAATATTGTGGAACACATTTTGCATGTCCAGGAACATTACAGGTTCATGAGCAGCTGCAACATCAGAAAGAACATTTCCGGTGCACAGTACCAGGTTGTTACAAAAAATATCAGGACAAATCCAAGTTGGAAGAACATGCTGCTGAACACGGCGTGGACGAACCATGGCTCTGCGACGTGTGTGGGAGGAGCTTTGTGACAGCAAGCAATCTCCGTTCACATTCTCGCTCTCATCAGGAAGTGCCAAAGGAACACAAGTGTAGTATGTGTCCGAAGCAGTTTCGGTCTCGCTTCAACTTGCGGAAACACATGATGTCTCACACAGGCGAGAAACCGTTCCTGTGCGAGTGCTGCTCCAAGCGCTTCGCAAGCAAGGAGACCTTGAAGCAACATTTGGTGATTCATAGTCGCGAGAAGCCATTCAAGTGCACCATGTGTCCATTCAGTACTGTGCGCCGGGGCAACTTAGCAAAGCACTATGAGACGCACGCAGATGCTAAGTTTGAGTGTAAGATTTGCCACAAGTCATTTGCCACACGATATGACTTGCAAAACCATCATTACACGCACACTGATGAGGAACTCAGCAAGATCATAGAACTGGAAGGACCTGGCATGCTCGTCTGCAGGACATTCAGATGTGATCAGTGTGGGAAATTCCTCTCTAGTAAGGCGTCTCTTATAATTCATCAGCGAATGCACTCTGGAGATCGCCCATTTCAGTGTTCAGAATGTGGCAAGCGTTTTAGTCAGAAACCATCACTGGACTATCATGTGCGTCTGCACACTGGTGAACGTCCCCATCAGTGTGTTTTTTGTGGACAGGGTTTCAATTCCAAAGCTGCCAAAGAGAGTCATGAGCGTGTGCACACCGGGGAGAAGCCCTATCGTTGCAACACGTGCTCTGCCAGATTCCGCAACTGTGCCAATCTTCGTCAGCATCAGCTGATACATAACGATTCTAGGGAGCATCCCTGTAGTGTTTGTGGCAAGCGATTCCGTAGACGTGAGGCTGTGCAAGTTCATATGAGAGTTCATACGGGCGAGCGTCCCTACTCGTGTCCTCTGTGCCTCAAGAAGTTCACACAGAAGGGCGACCAACTTAAGCACACTCGTGCGCACATAATGAAGAATGATAGAAGATGCTCTTTCTGTGGTAAGGAATTCCCTAACAGAAGAGAGCTGAAGCAGCACAGCTGTGAGAGAAAGATTGTTGCAGACACACATCATTTTGACACAGTTCTGCTCAATCCAACACAACTAATAGCTAATACTGAGATTACTGTAGTTACTGCCGAAATGCCAGAGACACCATAG
- Protein Sequence
- MAPLSECEKESEETSILNEDSVHQNCQASSMAPLSELEDYEAPELDVKEEEENDPVTCDPETDLEDKKEVEAIADIRDLLVPKEYKDEEYDTADEVKEEIIMDNEEDEIKTVLLVNGYSGAESGEQSQCRYCRQICDDLETHLQSSVCEYCGTHFACPGTLQVHEQLQHQKEHFRCTVPGCYKKYQDKSKLEEHAAEHGVDEPWLCDVCGRSFVTASNLRSHSRSHQEVPKEHKCSMCPKQFRSRFNLRKHMMSHTGEKPFLCECCSKRFASKETLKQHLVIHSREKPFKCTMCPFSTVRRGNLAKHYETHADAKFECKICHKSFATRYDLQNHHYTHTDEELSKIIELEGPGMLVCRTFRCDQCGKFLSSKASLIIHQRMHSGDRPFQCSECGKRFSQKPSLDYHVRLHTGERPHQCVFCGQGFNSKAAKESHERVHTGEKPYRCNTCSARFRNCANLRQHQLIHNDSREHPCSVCGKRFRRREAVQVHMRVHTGERPYSCPLCLKKFTQKGDQLKHTRAHIMKNDRRCSFCGKEFPNRRELKQHSCERKIVADTHHFDTVLLNPTQLIANTEITVVTAEMPETP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -