Hcor065470.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060895.1:147761616-147783682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.1e-05 0.035 17.2 0.7 1 23 443 465 443 465 0.96 2 11 1.7e-06 0.00071 22.5 3.8 1 23 489 511 489 511 0.97 3 11 1.1e-06 0.00049 23.1 4.8 1 23 517 539 517 539 0.97 4 11 3.9e-05 0.017 18.2 0.0 1 23 545 567 545 567 0.97 5 11 2.5e-06 0.0011 22.0 1.3 1 23 573 595 573 595 0.97 6 11 0.00033 0.14 15.3 0.2 1 23 601 623 601 623 0.95 7 11 0.0075 3.2 11.0 0.5 1 23 629 651 629 651 0.91 8 11 9.9e-07 0.00042 23.3 1.2 1 23 657 679 657 679 0.97 9 11 6.4e-06 0.0027 20.7 0.6 1 23 685 707 685 707 0.98 10 11 6e-07 0.00026 23.9 1.7 1 23 713 735 713 735 0.98 11 11 1.2e-06 0.00051 23.0 1.9 1 23 744 766 744 766 0.97
Sequence Information
- Coding Sequence
- ATGAATGTGATTTGTTGCATACATAAGCTGTTACAAAACGAAACCAGCTGTGACGTGAAGTTGTTAGTGGATGACTTCTGTATTTCGGAGGAAAAGCCAACTAGGGTAGATCGCATAGTTTTCGCACAGATTAGAAAACAGCTACATGATGAAGACGTTGCTGTTGATGAGTATAGAACTCTTATGGTAGATGAAGTCACCGATGAAGATGATATTGAAAGTGATTTTTGGGATAATCGAGCGATACAGCTAGAAAGTGAAACGAGCAGACTTCACAAGAAAGCGATCCAGCATTACATGTCATTTTCAGTGACGAGAGCAACGTCGAAGCTTCCAGAACGTGGCTACATCGGttcaagagaaaaaaataagATTGTTTCTCGTATGATGACATATAAAGTTGGCAACGGATTTGTTGCTGATGCCGCTGATATAGAAAAGAAAGCTGGCGAGTTTGTGACGGAAGTAAGGCGTTTCATTGAAGAGAATAATTTTACAACAGAGCAAATAATTAACGTAGATCAGTCAAGAGTTGCTAAAGAGTTACGTTCTGGGAAAACTCTTGCCGTCCGGGGAGCAAAGACGATTTATGGTACCGTGGTTTCAGGTGCAGCAATCACCCATGCATACATGATATTGCCTGTTATTGTAATGGATAGTGCCCTTCTTCAACTAATGTATGTTCTTGTCTCGGAACCCAGTGGGAAATTTCCAGCAAATGTGAACATTAGTCCTTGGAGTACTGTAACTTTATTATTCCATGGGCAGTGTACCAGGGCAGGGCATCGAACCTGGGACCGTCCAGTATTGATAAACGATTGTGATCTGTATTTTAATCGGGATAACTTACACGAAATTTTAGAAACTTGTAGTTTTGTTACCTCTTGGATAGAACAACCAGATTATGAACCAAATGAAGAAATTGCAGTTCCTTCTCAAATTATTACTAAAGAAACAACATTGTGTGGGTTGGAACTGAAGAAATCCAGAGAAGTAATTGTTCCTGATATAGATGCCTCTTTTGATGAAGACGAGGAGGATCAAGAAGAAGATTCTTTGGATGAGGATGAAGTGGAGAAGGTAGATGGTCTATCTGATGTTGACGATGATTCAATCTCAGAGAACGAAGAGGATGAACACCAAAGTTCCCAACCAGAAGGAGAGATCTCTGTGGGATCTGAGAGCAAGCAGGAGGTGTATTACCCTGGAAGTATCTTatgtgaCATACTTCTGGATGATAAAGGCAAAGGAAGTGCAGCAAATGAGAATGATGAAAAGCCTAGAGTGGTGATAGAAACCCCAGTCTGCCATACGGACAGAGAATTATTCCCTTGCTCTATTTGTGGCATATGTTTCATGGATCCAAATACACTGAAGGCTCACGAGAAGTTCCACATGACCGAGAAACAACGTATGCGTTCTCGTCGCAAACGCACAAATGTGAAGCCcccagaaataaaattacatacttgTGAGACATGCGGAAAAACTTTCACACGAGCAACTCATCTGAAACTTCACATAATGCTGCACACGGGTGAACGACCACATTCATGCTCAACTTGTGGGAAACGCTTCAAGAGATCTTCCGATTTGAAACTTCACCAACGACAGCACACAGGGGAAAGGCCTTATGCTTGCGAGCTATGTCCGAAAGCCTTTGCTCAGGCCATTTCTTTGAAAGAACACGTGAGATATCACCTGGGGGAGAAGCCATTCGTCTGCGATATTTGTGGCAAAGGTTTCGTGAGGAACCAGCATCTTCAAGAGCATAAAAAACTACACTCCTCGGAGAAGCCCCACATTTGCAACATCTGTGGCAAAGGGTTTGCAGTAGTGCGCCAGCTGAAACAGCATGCCAATGCACATTCGACAGAAAAGCCGCATGTTTGTGATATTTGTGGCAAGAGCTTTGCATGGGTCACACAGATCAAAGAACATAAAATGACACATTCATCGGAGAAACCACATCAGTGCGATATTTGTGGCAAAACCTTTGCAAGGAGGCGTAATCTGAAAGGTCATAGAGCTGTCCATTCTGTTGAAAGAGGGTATGTTTGCGACATTTGCGGGAAGGGTTTCAAGAGGGGGCAGACTTTGAAGGAACATAAGAACACACATCTTTCGGTGAAACCCCACACATGTGAAGTATGTGGTAAAACATTTGCACAAACCTGGTACCTGACAAAACACCAACGAGTCCATTCTGGGGAGGAGATCCCTAAACCTCATGTGTGCGACATTTGTGGTAAACGTTTCTCACGGACCAATAACCTTAGAGATCATAGAGCCACCCACGCTCATGATTTATAA
- Protein Sequence
- MNVICCIHKLLQNETSCDVKLLVDDFCISEEKPTRVDRIVFAQIRKQLHDEDVAVDEYRTLMVDEVTDEDDIESDFWDNRAIQLESETSRLHKKAIQHYMSFSVTRATSKLPERGYIGSREKNKIVSRMMTYKVGNGFVADAADIEKKAGEFVTEVRRFIEENNFTTEQIINVDQSRVAKELRSGKTLAVRGAKTIYGTVVSGAAITHAYMILPVIVMDSALLQLMYVLVSEPSGKFPANVNISPWSTVTLLFHGQCTRAGHRTWDRPVLINDCDLYFNRDNLHEILETCSFVTSWIEQPDYEPNEEIAVPSQIITKETTLCGLELKKSREVIVPDIDASFDEDEEDQEEDSLDEDEVEKVDGLSDVDDDSISENEEDEHQSSQPEGEISVGSESKQEVYYPGSILCDILLDDKGKGSAANENDEKPRVVIETPVCHTDRELFPCSICGICFMDPNTLKAHEKFHMTEKQRMRSRRKRTNVKPPEIKLHTCETCGKTFTRATHLKLHIMLHTGERPHSCSTCGKRFKRSSDLKLHQRQHTGERPYACELCPKAFAQAISLKEHVRYHLGEKPFVCDICGKGFVRNQHLQEHKKLHSSEKPHICNICGKGFAVVRQLKQHANAHSTEKPHVCDICGKSFAWVTQIKEHKMTHSSEKPHQCDICGKTFARRRNLKGHRAVHSVERGYVCDICGKGFKRGQTLKEHKNTHLSVKPHTCEVCGKTFAQTWYLTKHQRVHSGEEIPKPHVCDICGKRFSRTNNLRDHRATHAHDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -