Hcor027353.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hymenopus coronatus
Gene Symbol
-
Assembly
GCA_030762935.1
Location
CM060886.1:116166050-116208172[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.001 0.43 13.8 0.4 2 23 272 294 271 294 0.96
2 16 0.0016 0.68 13.2 2.7 2 23 302 323 301 323 0.97
3 16 5.7e-05 0.024 17.7 1.1 1 23 329 352 329 352 0.94
4 16 0.0016 0.67 13.2 0.4 1 23 358 380 358 380 0.98
5 16 4e-06 0.0017 21.3 2.5 1 23 386 408 386 408 0.96
6 16 4.3e-05 0.019 18.1 0.6 2 23 418 439 417 439 0.96
7 16 0.001 0.43 13.8 3.5 1 23 445 467 445 467 0.93
8 16 1.7e-06 0.00073 22.5 1.0 1 23 473 495 473 495 0.99
9 16 0.00051 0.22 14.7 0.1 1 23 501 523 501 523 0.98
10 16 1.4e-05 0.0059 19.7 0.3 1 23 550 572 550 572 0.99
11 16 3.1e-06 0.0013 21.7 0.5 1 23 578 601 578 601 0.98
12 16 0.0074 3.2 11.1 0.4 1 23 607 629 607 629 0.97
13 16 0.00041 0.18 15.0 1.1 1 23 635 657 635 657 0.99
14 16 1.5e-06 0.00064 22.7 1.4 1 23 663 685 663 685 0.97
15 16 2.2e-06 0.00095 22.1 1.6 1 23 691 713 691 713 0.98
16 16 0.00019 0.083 16.0 0.1 3 23 721 741 720 741 0.96

Sequence Information

Coding Sequence
ATGGAGAATGAACAGATGGATGATCTGGAGAAGGATGAAACATCTGTGCAATATAGCAATACAATTAACATCACAACAGTGATCGCTAACAGTCTACACTCAGTTGAAGAGGGCACTTATACGGCATGCCCTATAGAGGTTCAAAAAACACAAGGAATGGAAGTCAGATGTGTGGATGAAGCCATAATAGAGCAGACAGTACCAGTAATGGGTAATTTAATAATTGAAGAAGTGGCATGGCACAACCTGTGCCGTGTGTGTGCAAATCAGACGCAGGACCTTGTCTTTATGTTTGGAGAAGAGGGAGCAAGACTGCAGCTTGTGGACAAGATACACTGCCATTTACCAATAATGGTTACTGCTGAAGATAAGTTGCCACAGTCCATGTGCACATCCTGTATTTGTAGATTGAACTCTTGTCATGAACTTGTCAACATGTGCTTAGAGGCTGATGAGAAACTAAGGAAGCTCTTTCAAATGGACTACAGCTCGGAAATGGTTGAAAGCAATACCGCTACTGTCTCCACTGTAGCTGCTGACACTTTTAATGCTGAAGATGAAACTGATATGAATTTGGATACTGATAAACTTCTTTCTTTCACAagtAAGAGTCCACCTGCAGCTGTGATTTCTGAAATCTCCGAGGACCAAGAGGTAAAGCCTGATATGCTACTGGAAAAGGGTTCCAAATCTCCAGACAGGGTTTGCTATGAGGAGAGCAGCCAAAATGAAGAAGAGATGCTTATAAAAGAGGAAAGCTCTGAAGAAGCAGGAAATGAACCAGAAGACGAAAAGACAGAGACACAGCAATGGCCTTGTGATTTGTGTGACCATATGGCTAGTAGAAGATCTGCACTCATCATGCATCAGCGCCGAATGCATGGTCCAGCACCCTCATTGTTAACATGCAGCTATTGTGACAAAATTTGCCGCAGTACCATATCATTGCGAATGCACGAGCGCAGTCATTCTGAACCACGATCCTATGTTTGCGAGTACTGTGGACGAGCATTTAGAGGACGAAAGACATTACGAGAACATCATTTAGCAAATCATAGTGAAGAGAGGCCATATAAATGTGATCAGTGTGATCGAAATTACGGTTCACTCACAAGTCTGGATATTCACCGTGCCACACATTCCAATGAGACTCCATACTTATGTGATCTTTGTGGCAAAGCCTTCAAGCATGTGAGCAATTTGCGTTCACATAAACGTTCTCATCTTGATGGTGCGAGTAAAAATCGACAGGTCTGTGAAGTTTGTGGGAAAGGATTCCGATCAAGATTCCACCTCTCAGAGCATGCCAATGTTCACTTAGGACGTCGCCCATATGCTTGTAATATTTGTgggaagcattttcacaaaaaaatccaGTTGCGCCAACACAGTTCTGCTCATTCTGGTACACAGCCCTATAAATGCCCATTATGTGGTGTGCGATTTAATCGACGAGGCAATATGACACAGCATCTCAAGCGACATGAACGAGAGCGCAAGTATACATGTCGAGTCTGTGGGGAAGCATTTGCTACTCTTGGAGCTGTGCTTTCTCATCGTAAGAAACACTCAAAGGAAGAGGTGGAGAGCAGTTTTTGGCAATCTAATGGTGGttctgaaagcaacaaagatCCAGAGCATGTAGCGTTCAAATGTGAGGTTTGTGGAAAGCTACTTGCTAAGAAAGAATCTTTGACAATCCACATGCGCTCACATACAGGTGAAAAACCATACCAGTGTGGTGTGTGTGGCAAGAAACTGAGTAACAAAGGTTCCTTGGCATACCACATGAGATCCTTCCATACAGGAGAACGACCTCATACGTGTCAGTTTTGTGGAGAAGGATTTGTGTCTCGAGAGGCAAGACTCGTACATGAGAGGATACATACAGGAGAAAAACCGTATAAGTGTGACTCTTGTGGCATGGGATTCCGTTGTTCCAGTAACCTGGCTCAACATGCAAGGGTCCATTCTGAAGCTCGTCCTCATCCTTGTACTCAGTGTGGTAAGAGATTCCAGCGTAAGGGAGCACTGGATGTGCACATGCGAACTCACACTGGAGAACGTCCATTTCCATGTGAATTGTGTGGCCGAAGATTCACACAGAAGAATGACATGTTAAAGCATCGTCGCACACATTCTCCAAATCGCCCAGTGGCTTGCCAAATTTGTGGTCAGGAATTTCCAAGCAAACGTGACTTAGCCAAGCATAGAGTGATCCATAGAACAACAATAGTGGATGATCAACAGACTGAAGCCCAGCATACACTCCTCATTACCACAGCAGACAATGTGATTGTTCCCCCATTTCCAGAGATTAATGTGCCTCTTATTGAAAATGCTCAGACCTTGATTCTGCACAGGTTCTGA
Protein Sequence
MENEQMDDLEKDETSVQYSNTINITTVIANSLHSVEEGTYTACPIEVQKTQGMEVRCVDEAIIEQTVPVMGNLIIEEVAWHNLCRVCANQTQDLVFMFGEEGARLQLVDKIHCHLPIMVTAEDKLPQSMCTSCICRLNSCHELVNMCLEADEKLRKLFQMDYSSEMVESNTATVSTVAADTFNAEDETDMNLDTDKLLSFTSKSPPAAVISEISEDQEVKPDMLLEKGSKSPDRVCYEESSQNEEEMLIKEESSEEAGNEPEDEKTETQQWPCDLCDHMASRRSALIMHQRRMHGPAPSLLTCSYCDKICRSTISLRMHERSHSEPRSYVCEYCGRAFRGRKTLREHHLANHSEERPYKCDQCDRNYGSLTSLDIHRATHSNETPYLCDLCGKAFKHVSNLRSHKRSHLDGASKNRQVCEVCGKGFRSRFHLSEHANVHLGRRPYACNICGKHFHKKIQLRQHSSAHSGTQPYKCPLCGVRFNRRGNMTQHLKRHERERKYTCRVCGEAFATLGAVLSHRKKHSKEEVESSFWQSNGGSESNKDPEHVAFKCEVCGKLLAKKESLTIHMRSHTGEKPYQCGVCGKKLSNKGSLAYHMRSFHTGERPHTCQFCGEGFVSREARLVHERIHTGEKPYKCDSCGMGFRCSSNLAQHARVHSEARPHPCTQCGKRFQRKGALDVHMRTHTGERPFPCELCGRRFTQKNDMLKHRRTHSPNRPVACQICGQEFPSKRDLAKHRVIHRTTIVDDQQTEAQHTLLITTADNVIVPPFPEINVPLIENAQTLILHRF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00995494;
90% Identity
-
80% Identity
-