Hcor096722.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060900.1:191152421-191173424[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.12 2.7e+02 4.1 0.0 7 21 199 214 198 215 0.87 2 2 3.4e-09 7.7e-06 28.2 0.0 2 34 481 512 480 513 0.94
Sequence Information
- Coding Sequence
- ATGAACCGCAGCGCTGAGGTGCAggcgtcttggctgtgcccgaaggcgcagcagcggcggcaggccGGTGACGTTCCTGTCAACTTGCCACGACTGGCAGagGTCCACCACCTAGACGCCACACCACCTTCAGCCTCTACAGACACTGCGACGCGGGAGGCCATTCAGGACcgtcatgcggagatcctgaatatcggcgctcgcttagctgcgttggAAGAgaccttcaccagcgtcatcaccgAGAAACTGcaggacctacaagctgccaccaccgccgccatctccactctacagtcctccaccgctgtgctgtccaaccggatagccagtgtccaaacTCAGCTTCAGCAGGACCAACAatatcagcagcaacattcgcCTCTACACAAGAACCACCGACTTctcagcgacatccggctcatcatcagCTGCTATAAATGTCACACTAGCGAGTTGTGCATCGGCAAATACACCTGCGTCCACTATGCTGACATCTCCCACAATGgagcttgtgcttcagctccatcgtgtttGAACTGTAACGGGAAACAACCGTCTAGTTCCCAGGATTGGCCCCGTTTCACAAAAGGGAGAGCGATCCAGTATATATGGGTGAAAGAGAAGCTGTCATTCTCGAAAACTCCTGCAACAACGCAACTCTCTGTCCCGAGcttacagagtAGTCCTGCTCACCTATCACCGAAACCTTCGACCTCGGaaaatataactgataaactcgCAACGTATTCTGCACCAAAGAAACAGTCTAACACCAACTCTGTCAGACAAGACTTCCTGAAAAAGAATGACAAGTCTCCTGCCAAGTCATCTAATTGGAGGAAAATTCCACGCCACTCACCACATCAATCCTCCTCTGAGGGGTCATCTGGgcagtacatCCTCGTACGGTGTGACTTGTCCCCGGAGGAGGGTGTTCGGTTACATGGGGGCATCATGATTCAGAACCGTGATTACATTTTCACCGAATCGGTGCACTTAGTATCCGATATCCAGTCCATTGCTGTACAGATTGAGCTCCCTTTCGCCACATTCACCATTTGTAGCATCTACCTGCCTCCATCTGTTGACTTCTCTTTCACTGACTTAGAAGACCCAATTTCACAGTTACCAACACCCTttctattgggcggaaacaagcttagggagGCGAAGGACCACCCTATCCACTGCGTACCCTCCTCTCGTAACTCCCGTCGGGAAGAGGTAATACTGGCTAGCCAGCGCATAGTTCACTGCTTTTTACGCACAGCTGCCCTTTCGGAGGGATCCTGCTCCTATCTGTTCGCTCTGTTGCCAAGCTATGACAGTAAAACACGTACTGGTGATGCGTGCTCCTATAAGCTCATTTGCGAGGCACTCTCCAAATGCTTACCAGTACTGGAGCGATCTTGGATGGCGATACCAGAGCGATTGACTGCGGACAATATGAAGAAAGCCGTTAACGCATTTCAACAAGGGACAAGTCAACAACATGCCACTGAACTCTATGGAATTCCACATTCTTACCTGTGGTCATGA
- Protein Sequence
- MNRSAEVQASWLCPKAQQRRQAGDVPVNLPRLAEVHHLDATPPSASTDTATREAIQDRHAEILNIGARLAALEETFTSVITEKLQDLQAATTAAISTLQSSTAVLSNRIASVQTQLQQDQQYQQQHSPLHKNHRLLSDIRLIISCYKCHTSELCIGKYTCVHYADISHNGACASAPSCLNCNGKQPSSSQDWPRFTKGRAIQYIWVKEKLSFSKTPATTQLSVPSLQSSPAHLSPKPSTSENITDKLATYSAPKKQSNTNSVRQDFLKKNDKSPAKSSNWRKIPRHSPHQSSSEGSSGQYILVRCDLSPEEGVRLHGGIMIQNRDYIFTESVHLVSDIQSIAVQIELPFATFTICSIYLPPSVDFSFTDLEDPISQLPTPFLLGGNKLREAKDHPIHCVPSSRNSRREEVILASQRIVHCFLRTAALSEGSCSYLFALLPSYDSKTRTGDACSYKLICEALSKCLPVLERSWMAIPERLTADNMKKAVNAFQQGTSQQHATELYGIPHSYLWS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -