Hcor082678.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060898.1:148832489-148833970[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.036 80 5.7 0.0 24 39 139 154 138 156 0.87 2 17 0.13 2.9e+02 4.0 0.0 24 38 157 171 157 178 0.87 3 17 0.09 2e+02 4.5 0.0 24 40 193 209 192 214 0.87 4 17 8.9 2e+04 -1.9 0.0 24 39 211 226 210 228 0.83 5 17 0.44 9.8e+02 2.3 0.0 24 40 229 245 229 250 0.86 6 17 2.8 6.3e+03 -0.3 0.0 24 39 247 262 246 264 0.85 7 17 0.031 71 5.9 0.0 24 39 265 280 265 282 0.87 8 17 0.027 61 6.1 0.0 24 40 283 299 283 301 0.87 9 17 3.5 7.9e+03 -0.6 0.0 24 39 301 316 300 318 0.86 10 17 0.029 66 6.0 0.1 24 40 319 335 319 340 0.87 11 17 8.9 2e+04 -1.9 0.0 24 39 337 352 336 354 0.83 12 17 2.2 5e+03 0.0 0.1 24 40 355 371 355 376 0.85 13 17 8.9 2e+04 -1.9 0.0 24 39 373 388 372 390 0.83 14 17 2.4 5.4e+03 -0.1 0.0 24 40 391 407 391 410 0.84 15 17 2.1 4.7e+03 0.1 0.0 24 40 409 425 408 430 0.85 16 17 8.9 2e+04 -1.9 0.0 24 39 427 442 426 444 0.83 17 17 0.031 70 5.9 0.0 24 40 445 461 445 464 0.87
Sequence Information
- Coding Sequence
- ATGGGACAGTTTGTCCACTTGTCCGAACAACAAGGAGAAAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCAGAACAACAAGCAGAGAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCAGAACAACAAGTAGAGAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAAAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCAGAACAACAAGCAGAGAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCAGAACAACAAGTAGAGAGAATATGGGATATCATGGAACAGTTTGTCCAGTTTTCTGAACAACAAGGAGAGAGAATACGGGATATCATAGAACACTTTGTCCAGTTATCTGAACAAGGAGAGAGAGAATACGGGATATCATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGCAGAGAGAATACAGGATATCATGGAACACTTTGTCCACTTGTCAGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAGAGAATATGGGATATCATGGAACAGTTTGTCCAGTTTTCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACGGGATATCATGCAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACGGGATATCATGCAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATATGGGATATTATGGAACACTTTGTCCAGTTGTCTGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAGAGAATACGGGATATTATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACGGGATATTATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACAGGATATCATGGAACACTTTGTCCACTTGTCTGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTTGTCCAGTTATCTGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTGTCCACTTGTCAGAACAACAAGGAGAGAGAATACGGGATATCATGGAACACTTTGTCCAGTTATCTGA
- Protein Sequence
- MGQFVHLSEQQGERIRDIMEHFVHLSEQQAERIRDIMEHFVHLSEQQVERIRDIMEHFVHLSEQQGERIRDIMEHFVHLSEQQAERIRDIMEHFVHLSEQQVERIWDIMEQFVQFSEQQGERIRDIIEHFVQLSEQGEREYGISWNTLSSYLNNKEREYGISWNTLSTCLNNKQREYRISWNTLSTCQNNKEREYGISWNTLSTCLNNKEREYRISWNTLSTCLNNKEREYGISWNSLSSFLNNKEREYRISWNTLSSYLNNKEREYGISCNTLSSYLNNKEREYGISCNTLSSYLNNKEREYGILWNTLSSCLNNKEREYGISWNTLSSYLNNKEREYRISWNTLSTCLNNKEREYGILWNTLSSYLNNKEREYRISWNTLSTCLNNKEREYRISWNTLSSYLNNKEREYGILWNTLSSYLNNKEREYRISWNTLSTCLNNKEREYGISWNTLSSYLNNKEREYGISWNTCPLVRTTRRENTGYHGTLCPVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -