Hcor016866.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060883.1:80740507-80740911[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-14 6.6e-11 44.4 0.0 3 38 16 52 14 59 0.91 2 2 3.8 8.7e+03 -0.8 0.0 13 24 54 65 50 66 0.71
Sequence Information
- Coding Sequence
- ATGGGAAAATATACAAGAACCACTGAACGACAATCGTGGAGTGTGGAAAGTATGAATCATGCCATTAAGGATGTTTTAGAAGGCAAGATGGGTTACCTGAAGGCATCCAAGGAATATGGAGTTCCACGTAGTACTCTACAAGCAAGAGTATCGAAAGTGAACAAAGGCTTTCTATCTGTGCAAAGATGTGCAGATAAAGATTTGGGTAGATATAAGCCAACATTCTCTCTTCCACAAGAGGAAGAACTAGTGGACCATGTCATTACCATGGAGAGTAGATTGTTTGGCCTAAGCCTTAATGAACTCCATAAGCTAGCCTATGAATTAGCTGAGAGAAATGGCCTTGCTCACACTTTCAACAAACAGAAGCTAATGGCTGCAAAGCACGGCTTTATGCATTTCTAA
- Protein Sequence
- MGKYTRTTERQSWSVESMNHAIKDVLEGKMGYLKASKEYGVPRSTLQARVSKVNKGFLSVQRCADKDLGRYKPTFSLPQEEELVDHVITMESRLFGLSLNELHKLAYELAERNGLAHTFNKQKLMAAKHGFMHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820878;
- 90% Identity
- -
- 80% Identity
- -