Hcor071055.1
Basic Information
- Insect
- Hymenopus coronatus
- Gene Symbol
- -
- Assembly
- GCA_030762935.1
- Location
- CM060896.1:153441784-153457577[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.7e-07 0.0011 21.4 0.0 5 38 36 70 32 75 0.88 2 3 0.0041 9.2 8.8 0.0 23 39 114 130 95 133 0.81 3 3 2.6e-07 0.00059 22.2 0.0 1 39 171 208 171 214 0.86
Sequence Information
- Coding Sequence
- ATGCCCACTGTTGTATTTGTCCTTGAAGAGGCCACAGAGTTGCTACCTGTTGCCGTACCATCCCAGCGCCACAGCTACCATGGCAAGCAGTACTCACCCAAAGTCCTGAGCCAGGCAGTGGAGGATTTCCTCAGTGGCAGGTTCAGCTCTATTCGTGCATGTGCTCGCCATCACGGCGTGCCCATGACCACACTGCATTACCGGGTTAAACTTATGATTGCGAGAGTGGCTCGTGTTGCAGGGCTGGTGCGGTTCCGGGCACCACGGCGGTCCTACTCTAGCTCGAGCCTGTGGCAGGCGCTAATGGATGTCAAGATGGGGGAGAGCATCTACAGTTCTGCCAAGTTGCATGGGATTCCTCGTAAGACACTTCGCAACTGGATGCAGCGGTGGAACATCAAGAGTGCATATCCCATGCCTAAGCAGCTCCGAGGTTGTCCAACCAATCAGAAGGGATTCAAAAGAGATACGGTGGCATGGCCGCCGAAGGTGCGGCCCTATCGCCAGTACACCAATGACAACCTGTGGGCTGCTCTGATGGATGTCAAATGTGGTGGCAGCGTCTACCGTGCCTCTAAGGAGCATGGAATCCCTCGCAAAACTTTGCGCAACTGGATGAAGCGCTGGAATATCAAGAGCAAGTACGCTGCCCCCACCAGGAAGGTGGAGTATGCAGTGCCACACACCAACTTAACCctttag
- Protein Sequence
- MPTVVFVLEEATELLPVAVPSQRHSYHGKQYSPKVLSQAVEDFLSGRFSSIRACARHHGVPMTTLHYRVKLMIARVARVAGLVRFRAPRRSYSSSSLWQALMDVKMGESIYSSAKLHGIPRKTLRNWMQRWNIKSAYPMPKQLRGCPTNQKGFKRDTVAWPPKVRPYRQYTNDNLWAALMDVKCGGSVYRASKEHGIPRKTLRNWMKRWNIKSKYAAPTRKVEYAVPHTNLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00434732;
- 90% Identity
- -
- 80% Identity
- -