Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 2.3e+02 4.3 0.0 23 39 6 22 5 26 0.87

2 10 0.023 52 6.4 0.0 23 39 29 45 28 49 0.88

3 10 0.1 2.3e+02 4.3 0.0 23 39 52 68 51 72 0.87

4 10 0.12 2.7e+02 4.1 0.0 23 39 75 91 74 95 0.87

5 10 0.1 2.3e+02 4.3 0.0 23 39 98 114 97 118 0.87

6 10 0.1 2.3e+02 4.3 0.0 23 39 121 137 120 141 0.87

7 10 0.12 2.7e+02 4.1 0.0 23 39 144 160 143 164 0.87

8 10 0.12 2.7e+02 4.1 0.0 23 39 167 183 166 187 0.87

9 10 0.12 2.7e+02 4.1 0.0 23 39 190 206 189 210 0.87

10 10 0.077 1.7e+02 4.7 0.0 23 38 213 228 212 234 0.85

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	2.3e+02	4.3	23	39	6	22	5	26	0.87
2	10	0.023	52	6.4	23	39	29	45	28	49	0.88
3	10	0.1	2.3e+02	4.3	23	39	52	68	51	72	0.87
4	10	0.12	2.7e+02	4.1	23	39	75	91	74	95	0.87
5	10	0.1	2.3e+02	4.3	23	39	98	114	97	118	0.87
6	10	0.1	2.3e+02	4.3	23	39	121	137	120	141	0.87
7	10	0.12	2.7e+02	4.1	23	39	144	160	143	164	0.87
8	10	0.12	2.7e+02	4.1	23	39	167	183	166	187	0.87
9	10	0.12	2.7e+02	4.1	23	39	190	206	189	210	0.87
10	10	0.077	1.7e+02	4.7	23	38	213	228	212	234	0.85

Coding Sequence: ATGGTCGTGACAACATGTGACTTGTTTGATGTGCCCAGATGGTCGTTCAGCTCTCATTATAAAAGTGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAGATGGTCGCTCAGCTCTCATTATAAAAGTGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCCAGATGGTCGTTCAGCTCTCATTATAAAAGCGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAAATGGTCGTTCAGCTCTCATTATAAAAGTGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCCAGATGGTCGTTCAGCTCTCATTATAAAAGCGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCCAGATGGTCGTTCAGCTCTCATTATAAAAGCGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAAATGGTCGTTCAGCTCTCATTATAAAAGTGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAAATGGTCGTTCAGCTCTCATTATAAAAGCGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAAATGGTCGTTCAGCTCTCATTATAAAAGTGCCGTTTACTTGACAACATGTGACTTGTTTGATGTGCCAAGATGGTCGCTCAGCTCTCATTATCACTCTCAGTTAGCGAAATCAAGCTGCCAGTAA
Protein Sequence: MVVTTCDLFDVPRWSFSSHYKSAVYLTTCDLFDVPRWSLSSHYKSAVYLTTCDLFDVPRWSFSSHYKSAVYLTTCDLFDVPKWSFSSHYKSAVYLTTCDLFDVPRWSFSSHYKSAVYLTTCDLFDVPRWSFSSHYKSAVYLTTCDLFDVPKWSFSSHYKSAVYLTTCDLFDVPKWSFSSHYKSAVYLTTCDLFDVPKWSFSSHYKSAVYLTTCDLFDVPRWSLSSHYHSQLAKSSCQ

Sequence clustering based on sequence similarity using MMseqs2