Basic Information

Transcription Factor Domain

TF Family: zf-GATA
Domain: zf-GATA domain
PFAM: PF00320
TF Group: Zinc-Coordinating Group
Description: This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.05 1.2e+02 2.8 0.0 4 16 96 107 94 111 0.77

2 10 0.013 30 4.7 0.0 4 16 115 126 113 130 0.85

3 10 0.013 30 4.7 0.0 4 16 134 145 132 149 0.85

4 10 0.013 30 4.7 0.0 4 16 153 164 151 168 0.85

5 10 0.012 28 4.8 0.0 4 17 172 184 170 187 0.84

6 10 0.22 5.2e+02 0.8 0.0 4 16 191 202 189 205 0.83

7 10 0.014 33 4.6 0.6 4 17 210 222 208 241 0.86

8 10 0.2 4.8e+02 0.8 1.2 8 16 241 249 229 253 0.79

9 10 0.013 30 4.7 0.0 4 16 257 268 255 272 0.85

10 10 0.01 24 5.0 0.1 4 17 276 288 274 302 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.05	1.2e+02	2.8	0.0	4	16	96	107	94	111	0.77
2	10	0.013	30	4.7	0.0	4	16	115	126	113	130	0.85
3	10	0.013	30	4.7	0.0	4	16	134	145	132	149	0.85
4	10	0.013	30	4.7	0.0	4	16	153	164	151	168	0.85
5	10	0.012	28	4.8	0.0	4	17	172	184	170	187	0.84
6	10	0.22	5.2e+02	0.8	0.0	4	16	191	202	189	205	0.83
7	10	0.014	33	4.6	0.6	4	17	210	222	208	241	0.86
8	10	0.2	4.8e+02	0.8	1.2	8	16	241	249	229	253	0.79
9	10	0.013	30	4.7	0.0	4	16	257	268	255	272	0.85
10	10	0.01	24	5.0	0.1	4	17	276	288	274	302	0.85

Coding Sequence: atgtcggtccgagtacaggatcagagtacgaaggctattccactacagagaggcgtgagacagggagatgtcatatctccgaaactgttcactgccgcgctggaaaacgccttcaagctcttgcaatggaaaggattcggcatcaacatcaacggcgagtatatcactcaccttcgatttgccgacgatattgtagtcttggcagaatcgctggaagaccttagcactatgctcgaagacctcaatcgagtctcccaacagCCCTCTGTGGCGTTATCAGCCCTCTGTGACGTTACCAGCCCTCTGTGGCGTTACCAGCCATCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCATCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTATCAGCCCTCTGTGACGTTACCAGCCCTCTGTGGCGTTACCAGCCATCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGCTTCCCCTGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTACCAGCCCTCTGTGGCGTTATCAGCCCTCTGTGGCGTTACCAGCCCTCTgtggcgttactggccttatgtggcattactggccttatgtggcattactggccttacgtggcgttacTAACTTCTTTTATTAG
Protein Sequence: MSVRVQDQSTKAIPLQRGVRQGDVISPKLFTAALENAFKLLQWKGFGININGEYITHLRFADDIVVLAESLEDLSTMLEDLNRVSQQPSVALSALCDVTSPLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTSPLWRYQPSVTLPALCGVTSHLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTSPLCFPCVTSPLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTSPLWRYQPSVALPALCGVTGLMWHYWPYVALLALRGVTNFFY

Sequence clustering based on sequence similarity using MMseqs2