Basic Information

Gene Symbol
Sall1
Assembly
None
Location
HLhylVes1:10015556-10034818[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.49 40 5.3 0.1 2 23 7 28 6 28 0.97
2 13 0.00036 0.029 15.2 0.5 1 23 996 1019 996 1019 0.96
3 13 9.5e-06 0.00078 20.1 1.3 2 23 1117 1138 1116 1138 0.96
4 13 0.00014 0.011 16.5 0.8 1 23 1144 1166 1144 1166 0.98
5 13 0.0066 0.54 11.2 2.5 2 23 1173 1194 1172 1195 0.95
6 13 0.11 9.3 7.3 0.6 5 23 1208 1226 1207 1226 0.96
7 13 0.015 1.2 10.1 1.0 3 23 1233 1254 1232 1254 0.96
8 13 0.039 3.2 8.8 0.1 2 23 1270 1290 1269 1290 0.96
9 13 0.0053 0.43 11.5 0.6 1 20 1296 1315 1296 1318 0.88
10 13 0.00034 0.028 15.3 0.8 1 23 1326 1348 1326 1348 0.99
11 13 0.0047 0.38 11.7 7.2 1 23 1354 1376 1354 1376 0.98
12 13 5.4e-06 0.00044 20.9 1.3 1 23 1382 1406 1382 1406 0.98
13 13 0.00045 0.037 14.9 4.4 1 23 1412 1434 1412 1435 0.95

Sequence Information

Coding Sequence
ATGGAACACCTGCAGGTGCAATGCCCCGTGTGTACTTTGTACCTCCGCAATGGGATGACGCTGGAATCCCATCTCGACACTCACCCCAAAGATCAGATGATCAAAGCATTGTGCAGTCTCACCACTAAGAGCAGTAACTATGGGAGCAGGACTTCCACTCCGCTGCATTCGGAACGGTCGTACAGAAGCAGGTCTCGCACACCTGTTAATGATGAGAGATGGAATAATTCACAACAGAGTGTGGAACATGATAGGTATTGGCGGAGACCACCGAGCAGGACCCCTAAATCGACTCCTGTGGCTAGTGTTTCTGGAAATGTTACTCCAGAGAACAGGGTGGGGGAGCATTTTGAAAGTGGTTCAGGACCCTCGGGCCAGCATTCTCTGCCTCCGTACACTATGAAGAGTGATAAAACACAACAAACACATCAGAATACTCTTATGTCAGATTTTGACAGCTTCTACCAGGATCAGCAGGAGGATAGGGAGATTAAATTTTCACGCAGTGCCGAGTACTCTGCAATGAACAATAGCAGTGTGTTTACCTACAATGTGCCTACAGTAGCATCCGGCTTGAGGTTCCAAGCAAATACCAGTTTGTTACCAAGTATATCAAAGAAAGCACCTGATTTTGTTAAAATTTTACCAAAACCAAACAATGTTCTAGTGAAGACTAATGTAGGTGGTGTACAATACATTACCTCCGGGGTGAAACCCATGCATGTGATGATGCCTCCAGCACCTGCATTTGTACAGAAGAATACACACAATAGCATGATTATGACAAGCAGTAATCACTCGTCCCTGAATGTGGACAAGTCAATAACATCACAATTGAGTGGAAACCATTTCAATCATTTGGCATCTGGGAATTTTACCTCAGGAATGTCAACAGTGATGACACAAAATTCACAGATAGTATACAGAGAAATGGTGCATAATATTGATGGAAAACCTTTCATTTCTAGTGTACCTGCAACAATAACCACTGGCGCTGGAGCCACTTTAACTCAAACCAATCCATTGCATCAAAATGTGATGGTTTTGGATCAGTTTGGTGCTTGCATGTACACAACTCCACAGCATCTCCTACCCAAATCTTGTACCACATCTGTGTGCACTGAAAATGTTTCATTTGTGCCTACCAATCATGTGGTAAAATCAACAGTTTCAAACATTAATGATCCTAAAACCCTAGTTATTGAAGTGGGTCCTATGTTACCATCACAGTTTGTTTCTCCAGTTATAACTGCTCCTAGTACAACAGTTACTTCTTCAATACCGCCCACACCTTGTAGCACTCCGGAGACATCAGTGAAGATTGATAGAGCTGATGACAATATCAGTGTTAAATCTGACACTAAAAGTGACATGTCTGGCTCAAGTAAAGGTTTAAAAATATTAAGCAATATAAAGGTGGAGGTGCCTGTACAACATAACAAAAATATGGTGAATACTATAATGGACTTGACTGAATCCAATGATCAGGAGTACCCAGAAGTAGAAACGGAAAGTACAAGATTGCCAGTCTTGCCTCATGTAAATAATAAACAACTTTTTGAGGTCCCCTTACTACCTGCTCCACTAGCAGGTACCAGTGTCAGTAACTCATTTTCAGTGTTAAAACATACTAATACTGCACTACATAAAGGCTCAACCAGCAAATTGTTAGAGACTAAGTTAGACACTGAGTATAATGATGTATGCCCTGTGCCTGAACTCATATGCAATGAAAAACCCTCAATATCACCTTGCAGTGAACTGTCTGAGCATGGTGAAAACTCTACAGATCGTCCGGCACTGTCCCCAAAACTATTGCAAGATAAGCAAAAGAAAAATAAAGTTGAAATAGGAGAGAAGAAACTTCAAGTAGCTGTAAAACCATATAGGTTAAACACGTTAAGACTGAATAACCTTTATGTGAAAAAGAACAAGAAAATTTTGCAAATAAAAAATGCTAAGCCATTTACAAAGACCACTCCAAGCAAAATAGAAATGGAGCCAGTGCCATCTTCTAGCAGGGCACCTCAAGATTTTTCCATGAAAAAACATATAGAGATGAGTGAAGTAAGAGAGCCTTCTACATTGCAAACAGTGTCTGTTGAAGAGATAAAAGAAAACGAAGATAATGATGATAATAATGGTTTTGATGCAGACACTGAAGAGCACTCTTTAGACATGGAAACATTGCAGCCACCTTCTGTGATTACCCCTACAACAGAGTTCTCTACCACTGTTGATATGGTGCAAGTAAAAGAGGAAACAAACACAAGCAACGAAAGTGCATTTAGCAATGGAGCTGCAACGCCAGATAGAGTTCTAGCGCCCATGGAGAGTCTACGGCCCATCAATATGATGTCATATGCCAACCTTCCCGCTGATAATTTCGAAGAGGAAGCAAACCATCGAGAATTGATGAGCATTGAATCAGCATCAAAGAACAAACAGTTTGTCAGTATGATGAATGATAATTACTTTGGTGATAATATGTATCCAGATTATTTCACTCAAGATAGGGATCAGCCGCCAATGCCAAAAGAGACGGTGTACGGAGTGTGGGGCGAATCGTCACAGAAAGACAATGAATATGTACTTCCAGATTTTATACATGATAAATACAAGTTACCTGAGAATCGGGGTTTGGTGTACTCGGAGTTGGAGAATAGGGAAGGGACAGCGGATGTGGATCCTGACGGGTGTGAGAGGGACAGCAAGGTGGACGTGCTGAGTGAAGGGAGGAGCGAGGGGGAGGCTCCGCTGAACATCTGCGCGGACGAGCGCATGCCGCCGCGCGGGGAGCTGAGCGGCCAGGAGAGCAACGGAGACATGGAGTCAGCTTGGACCGGGATGTACACTGACGTGCCGCCCTCGGAGCCCTACGACCTGATGGCGCGCGAGAGCTGGATCTCCGACGGATCTGACGTCGACGTGGGCGAAAAGAGGGAGAATTTAGAAGAAGACATGCAGTATCCAAAGAACAGGACATACACTTGCGCGCTGTGCAGCTTGAAGTTCTCATCTCCTAAGGAGTTGCGAGCACATAGGACCAAAGCGCACGCCGCCGCGGGGAAGACTTCATACAGCCGCATGATCACCGCCCGCGCCATCAAGAAAGAGGAGAAGACCGAAGACACTGTTATGGGATGCACAATGGTGGACACTAAAGAATCAATTACATCAACAATACTAGAAGTCTACGACATGGAAGAGAGCAAACTGTCGACCAACATCGCAGGAATTATCAAGCAGGAGACCAAGAGAAGGAGACGGGACTTCGTGTGTCCAACTTGCAAAGTCGACCAGTTGACAGACGCGGCCTTCCACGCCCACCTCAAAATACATCCGCTAGAGTGCCTCACTTGCGGCAAATGTTTCTATAGGAGGGCCAACCTGGCGCTCCATATAAAAATGCATTTAGGTATTAAAAATTACAAGTGCGACGTGTGCGAGAAGCGGTTCGTAACGCGCCAGAAGCTGTCGGAGCACGAGAACGTGCACACGGGCCGCGCGCCCGTCAAGTGCACCGTGTGCGACGACACATTCCGCAGATACTCCAACATGGTGCAGCACAGGGACCGTCACCACTTCGGCAAGCGCGCACGCGTGCGCGATTTCGTGTGCCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTCGTGTGGCACCAGGAGACGCACGACGAGCGGCCCAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACCCGCCACGTGCGCCGCATGCACAACGAGTACTACCTGGCGCCGCGCGCGCGCTCCACAGACAACGTGCCCTGCCCCGTCTGCAAGCAGATATACCTGCGCGCGAACCTGCGCACGCACCTGCTGACGCACAGCGGCAAGCGTCCGTTCGTGTGCATCGTGTGCAACAAGGGCTTCACGTCCAAGTGGAATCTGAAGCTGCACCGCTGGACGCACATGAGCCGCTCTGCCAAGCCCTTCAAATGCAACCTGTGCAAGGGCGCCTTCATCCGCCAGACCGAGTACATATCGCACATGAACTCGCACAAATCCGTCAGGCCGTACACGTGCAACTACTGCGGCTGCCAGTTCATCAGGAAATACAACTGTCAAAGGCACGTGAGGGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGCCCGAGTGCGGGAAGTCGTTTCACCGGAGCTACTACCTGTCGGAGCATATGAAGGTGCACAGTGGAGCGCGCCCGTTTGTGTGCAACATCTGTGGTAAGACGTCAAGCAACAAGTCCAACCACAACAAGCACGTGAAGATCCACCACGCGCGCGAGCCCGTCGCCACGGAGGCGTAG
Protein Sequence
MEHLQVQCPVCTLYLRNGMTLESHLDTHPKDQMIKALCSLTTKSSNYGSRTSTPLHSERSYRSRSRTPVNDERWNNSQQSVEHDRYWRRPPSRTPKSTPVASVSGNVTPENRVGEHFESGSGPSGQHSLPPYTMKSDKTQQTHQNTLMSDFDSFYQDQQEDREIKFSRSAEYSAMNNSSVFTYNVPTVASGLRFQANTSLLPSISKKAPDFVKILPKPNNVLVKTNVGGVQYITSGVKPMHVMMPPAPAFVQKNTHNSMIMTSSNHSSLNVDKSITSQLSGNHFNHLASGNFTSGMSTVMTQNSQIVYREMVHNIDGKPFISSVPATITTGAGATLTQTNPLHQNVMVLDQFGACMYTTPQHLLPKSCTTSVCTENVSFVPTNHVVKSTVSNINDPKTLVIEVGPMLPSQFVSPVITAPSTTVTSSIPPTPCSTPETSVKIDRADDNISVKSDTKSDMSGSSKGLKILSNIKVEVPVQHNKNMVNTIMDLTESNDQEYPEVETESTRLPVLPHVNNKQLFEVPLLPAPLAGTSVSNSFSVLKHTNTALHKGSTSKLLETKLDTEYNDVCPVPELICNEKPSISPCSELSEHGENSTDRPALSPKLLQDKQKKNKVEIGEKKLQVAVKPYRLNTLRLNNLYVKKNKKILQIKNAKPFTKTTPSKIEMEPVPSSSRAPQDFSMKKHIEMSEVREPSTLQTVSVEEIKENEDNDDNNGFDADTEEHSLDMETLQPPSVITPTTEFSTTVDMVQVKEETNTSNESAFSNGAATPDRVLAPMESLRPINMMSYANLPADNFEEEANHRELMSIESASKNKQFVSMMNDNYFGDNMYPDYFTQDRDQPPMPKETVYGVWGESSQKDNEYVLPDFIHDKYKLPENRGLVYSELENREGTADVDPDGCERDSKVDVLSEGRSEGEAPLNICADERMPPRGELSGQESNGDMESAWTGMYTDVPPSEPYDLMARESWISDGSDVDVGEKRENLEEDMQYPKNRTYTCALCSLKFSSPKELRAHRTKAHAAAGKTSYSRMITARAIKKEEKTEDTVMGCTMVDTKESITSTILEVYDMEESKLSTNIAGIIKQETKRRRRDFVCPTCKVDQLTDAAFHAHLKIHPLECLTCGKCFYRRANLALHIKMHLGIKNYKCDVCEKRFVTRQKLSEHENVHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFGKRARVRDFVCQCGAVFHSRAKLVWHQETHDERPKACLYCSDKFVHAASLTRHVRRMHNEYYLAPRARSTDNVPCPVCKQIYLRANLRTHLLTHSGKRPFVCIVCNKGFTSKWNLKLHRWTHMSRSAKPFKCNLCKGAFIRQTEYISHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFVCNICGKTSSNKSNHNKHVKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01430180;
90% Identity
iTF_00428435;
80% Identity
-