Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 1.6e+03 -0.4 0.1 34 40 8 14 2 20 0.85

2 13 0.004 3.2 8.2 2.6 17 40 22 42 8 45 0.85

3 13 0.001 0.8 10.2 0.2 18 40 51 70 47 73 0.90

4 13 0.033 26 5.3 0.8 18 40 79 98 75 101 0.82

5 13 0.026 20 5.7 0.1 18 39 107 125 102 129 0.80

6 13 0.0069 5.5 7.5 0.2 18 40 135 154 131 157 0.82

7 13 0.026 21 5.6 0.2 18 39 163 181 157 185 0.81

8 13 0.0069 5.5 7.5 0.2 18 40 191 210 187 213 0.82

9 13 0.026 21 5.6 0.2 18 39 219 237 213 241 0.81

10 13 0.0069 5.5 7.5 0.2 18 40 247 266 243 269 0.82

11 13 0.026 21 5.6 0.2 18 39 275 293 269 297 0.81

12 13 0.0069 5.5 7.5 0.2 18 40 303 322 299 325 0.82

13 13 0.026 21 5.6 0.2 18 39 331 349 325 353 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	1.6e+03	-0.4	0.1	34	40	8	14	2	20	0.85
2	13	0.004	3.2	8.2	2.6	17	40	22	42	8	45	0.85
3	13	0.001	0.8	10.2	0.2	18	40	51	70	47	73	0.90
4	13	0.033	26	5.3	0.8	18	40	79	98	75	101	0.82
5	13	0.026	20	5.7	0.1	18	39	107	125	102	129	0.80
6	13	0.0069	5.5	7.5	0.2	18	40	135	154	131	157	0.82
7	13	0.026	21	5.6	0.2	18	39	163	181	157	185	0.81
8	13	0.0069	5.5	7.5	0.2	18	40	191	210	187	213	0.82
9	13	0.026	21	5.6	0.2	18	39	219	237	213	241	0.81
10	13	0.0069	5.5	7.5	0.2	18	40	247	266	243	269	0.82
11	13	0.026	21	5.6	0.2	18	39	275	293	269	297	0.81
12	13	0.0069	5.5	7.5	0.2	18	40	303	322	299	325	0.82
13	13	0.026	21	5.6	0.2	18	39	331	349	325	353	0.81

Coding Sequence: AAGAAATTTACTATAAGTGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGCGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTGAAAGTTGTAGTTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGA
Protein Sequence: KKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTESCSLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDI

Sequence clustering based on sequence similarity using MMseqs2