Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00057 0.45 11.0 0.4 17 40 21 41 14 44 0.87

2 10 0.00078 0.61 10.5 0.2 18 40 50 69 46 72 0.90

3 10 0.00078 0.61 10.5 0.2 18 40 78 97 74 100 0.90

4 10 0.026 20 5.7 0.8 18 40 106 125 102 128 0.82

5 10 0.021 17 6.0 0.2 18 39 134 152 130 159 0.82

6 10 0.0051 4.1 7.9 0.3 18 40 162 181 155 184 0.82

7 10 0.021 16 6.0 0.3 18 39 190 208 182 212 0.81

8 10 0.0072 5.7 7.4 1.0 18 40 218 237 205 243 0.84

9 10 0.02 16 6.0 0.2 18 39 246 264 238 268 0.81

10 10 0.0071 5.6 7.5 0.1 18 39 274 292 270 293 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00057	0.45	11.0	0.4	17	40	21	41	14	44	0.87
2	10	0.00078	0.61	10.5	0.2	18	40	50	69	46	72	0.90
3	10	0.00078	0.61	10.5	0.2	18	40	78	97	74	100	0.90
4	10	0.026	20	5.7	0.8	18	40	106	125	102	128	0.82
5	10	0.021	17	6.0	0.2	18	39	134	152	130	159	0.82
6	10	0.0051	4.1	7.9	0.3	18	40	162	181	155	184	0.82
7	10	0.021	16	6.0	0.3	18	39	190	208	182	212	0.81
8	10	0.0072	5.7	7.4	1.0	18	40	218	237	205	243	0.84
9	10	0.02	16	6.0	0.2	18	39	246	264	238	268	0.81
10	10	0.0071	5.6	7.5	0.1	18	39	274	292	270	293	0.80

Coding Sequence: AAATTTTCTGAAAGTGGTAATTTGAAAACACGTTTAGGAATACATTCTGGTGAGAAACCATATAAATGTGATATATGTGACAAGAAATTTACTATAAGTGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGCGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTGAAAGTTGTAGTTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGC
Protein Sequence: KFSESGNLKTRLGIHSGEKPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTESCSLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLR

Sequence clustering based on sequence similarity using MMseqs2