Basic Information

Gene Symbol
-
Assembly
None
Location
HLhylVes1:27818-28933[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0012 0.92 10.0 0.2 18 40 4 23 2 26 0.90
2 13 0.001 0.83 10.1 0.2 18 40 32 51 28 54 0.90
3 13 0.001 0.83 10.1 0.2 18 40 60 79 56 82 0.90
4 13 0.034 27 5.3 0.8 18 40 88 107 84 110 0.82
5 13 0.027 21 5.6 0.1 18 39 116 134 111 138 0.80
6 13 0.0071 5.6 7.5 0.2 18 40 144 163 140 166 0.82
7 13 0.027 22 5.6 0.2 18 39 172 190 166 194 0.81
8 13 0.0071 5.6 7.5 0.2 18 40 200 219 196 222 0.82
9 13 0.027 22 5.6 0.2 18 39 228 246 222 250 0.81
10 13 0.0071 5.6 7.5 0.2 18 40 256 275 252 278 0.82
11 13 0.027 22 5.6 0.2 18 39 284 302 278 306 0.81
12 13 0.0071 5.6 7.5 0.2 18 40 312 331 308 334 0.82
13 13 0.027 22 5.6 0.2 18 39 340 358 334 362 0.81

Sequence Information

Coding Sequence
AAACCATATAAATGTGATATATGTGACAAGAAATTTACTATAAGTGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGCGATATATGTGACAAGAAATTTACTATAAGCGGTAATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTGAAAGTTGTAGTTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGACATATGTGATAAAAAATTTACTAGAGGTGATTATTTGAAAACACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGTGACAAGAAATTTACAGAAAGTGGTACTTTGAAAATACATTTACGCGTACATTCTGGTGAGAGACCATATAAATGTGATATATGA
Protein Sequence
KPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTISGNLKTHLRVHSGERPYKCDICDKKFTESCSLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDICDKKFTRGDYLKTHLRVHSGERPYKCDICDKKFTESGTLKIHLRVHSGERPYKCDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00820297;
90% Identity
iTF_00820297;
80% Identity
iTF_00820297;