Hlin009003.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000009.1:13454317-13467092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00039 0.028 15.4 0.7 1 23 272 294 272 294 0.99 2 11 0.85 61 4.9 7.1 1 23 301 324 301 324 0.94 3 11 4.3e-05 0.0031 18.5 0.2 1 23 355 378 355 378 0.96 4 11 0.0059 0.42 11.7 0.6 2 23 383 405 382 405 0.93 5 11 0.0064 0.46 11.6 0.1 2 20 416 434 416 436 0.95 6 11 2.8e-06 0.0002 22.2 0.9 3 23 446 466 446 466 0.99 7 11 0.11 7.7 7.8 0.7 2 23 482 504 481 504 0.95 8 11 9.9e-05 0.0071 17.3 4.5 1 23 521 543 521 543 0.98 9 11 0.0011 0.078 14.0 0.7 1 23 549 571 549 571 0.97 10 11 6.4e-05 0.0046 17.9 1.3 1 23 577 599 577 599 0.96 11 11 0.00037 0.026 15.5 3.1 1 23 605 628 605 628 0.96
Sequence Information
- Coding Sequence
- ATGGACACCACTAAAGACGATGCACGAACGACTGCGGTTAAAACACCTATGGAGGGCGATATCACAGCAAAAGAACAAGTCAAACGAGAAATAACTTACGAACGTCCTGAAAATGACAAAACACAAAGTAAAGTGAAGATTGTAAAGAAAACTATGTTTTCTGGAGACAAAGAAAGCAGGGAGATAGAAAATAGCGACCATAGTGAACATTCAATTAATATACCAATAGGAAATGAAGACGTTAATATCTCGGGCAAAGAACGTTGTTCATCTGCTGCAAAACTCAGCGCGCAAATAATGAATATACCTTATCAAGATATGCTAGATGACCTATCTAATAAACAGTCTCATTCATCTTACAAAATCTCTGCATATGACGTTTTGAAAAGAATCAGAGACGCTTATAAAGCATGTAGTTGCAAAGTTTGCGAATGTCTCGTCGAAATTGAAGCTGACAATGATATTCTAATAGAAAACAATTTCTCAGAAGATAGCCTTCCATTGGACACAGTTATTTCactaaaagataaacaaaaaccTCCGAAAGCAAAGAAAGAACccaaaacaaagaaaagaaaaattaaagagAAGATTGAAAAGGTAGACATAGAAGATTCTTTGAGTGATAATGAACCTTTATCTAAAGTGTCCAAGAATTGTAATAAAGAGAAGGAAAATATCCAAAAGAAGTATCCtaagaattttaatataagcTACTTTGAAGATTTTGCTACAGTTGTGTTCTTGACTCCTGAAGATGCAAAGAAGGAATTGTTGCTTAGAAAGGATACATCAAATTATAAGAACTCGCCATTTAAGTGTGAAATGTGTTACAGAGGGTTTGAAGCTAAGGCTGCTTTTGAAAACCACATGAAGAGGCATAGTGTGGAGTATGGTGAACACAAATGTGATCTTTGCCAATTGAGATTCCCTGAGCAGAGATTTCTGTGTAAACACCGTCTTGCCTGCCACAAGAGAAAGTTCTATTGCAAGTTGTGCCCATATGTTTGCTTTTGCACccATCAAGCTAAAACCCATGTCAGCCTACATAAAGGAAAGAAATATCCTTGCAAAGAATGTGGTGAGGTGTTTAGCATGCCAAACAGTTTGTTGATGCACAAACGGTTGAAACATTTGACGGAGTGCGTGTGTGAATTGTGCGGGAACACGTTCGCGACGCCGCGCGGACTGTACTCCCATAACATGAAGATACATAGGCAGGATAAGAATGGCAAACAGGGTCCGAAGTGTGAAGATTGCGGAATACATTTCGCAACAGAAGTAGCCTGGAAGAAACATTTGGTGCTCTCGTCCAAACATAATGTCAGTAACGGTTGCAAGTATTGTGGAGAAACATTTTCCAACAGTGAAGAACTCAAGTCGCACACCAAGATACATGCGAGAAAACACGCCAATCGTGCGGATAATATCAAACTACCTACATCTTGTAGTATTTGTGAAAAATGGCTGACCAACCGCAACGAGTACAAGTCACACATGACGTCAGAACACCCACAGTCCGACGTCGCCAAGAGGTTGGATTTGGAGGATCAAACTCCATTTGTGTGTGAAATATGCGGACAGATGTTCAAGAAGCAGTGTTTCCTGACGTACCACCAGCGCAAGCACAGCGGCGAGCGGCCGTACGAGTGCGGGGAGTGCCACAAGCGCTTCCCGCTGTGCGGCGCGCTGGCCTCGCACCGCGCCGTGCacgagcgcgcgcgccgccacgcCTGCGCGCTGTGCGCACGCATGTTCACCTTCAAGAGCGCGCTCAATAAACACATGAAGGTCCACCTTGGTATCCGACCACACAAGTGCGCGATCTGCGACAAATCCTTCATCAACCGCTGTGACGTCAAACTGCACATCAAATACGTCCATAATAAAGTACCATGGCCCAAGAGAGATAGAAGCAAACGGACCAACACTGATGGAGCTTTTATGCAATATTCATAA
- Protein Sequence
- MDTTKDDARTTAVKTPMEGDITAKEQVKREITYERPENDKTQSKVKIVKKTMFSGDKESREIENSDHSEHSINIPIGNEDVNISGKERCSSAAKLSAQIMNIPYQDMLDDLSNKQSHSSYKISAYDVLKRIRDAYKACSCKVCECLVEIEADNDILIENNFSEDSLPLDTVISLKDKQKPPKAKKEPKTKKRKIKEKIEKVDIEDSLSDNEPLSKVSKNCNKEKENIQKKYPKNFNISYFEDFATVVFLTPEDAKKELLLRKDTSNYKNSPFKCEMCYRGFEAKAAFENHMKRHSVEYGEHKCDLCQLRFPEQRFLCKHRLACHKRKFYCKLCPYVCFCTHQAKTHVSLHKGKKYPCKECGEVFSMPNSLLMHKRLKHLTECVCELCGNTFATPRGLYSHNMKIHRQDKNGKQGPKCEDCGIHFATEVAWKKHLVLSSKHNVSNGCKYCGETFSNSEELKSHTKIHARKHANRADNIKLPTSCSICEKWLTNRNEYKSHMTSEHPQSDVAKRLDLEDQTPFVCEICGQMFKKQCFLTYHQRKHSGERPYECGECHKRFPLCGALASHRAVHERARRHACALCARMFTFKSALNKHMKVHLGIRPHKCAICDKSFINRCDVKLHIKYVHNKVPWPKRDRSKRTNTDGAFMQYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787975;
- 90% Identity
- -
- 80% Identity
- -