Hlin022866.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000036.1:459445-467966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.093 6.6 8.0 1.2 1 23 162 184 162 184 0.98 2 9 0.00037 0.027 15.5 0.1 1 23 191 213 191 213 0.97 3 9 2.7e-05 0.0019 19.1 0.9 2 23 245 267 244 267 0.96 4 9 3e-06 0.00022 22.1 0.3 1 23 276 298 276 298 0.98 5 9 0.00019 0.014 16.4 2.3 1 23 303 325 303 325 0.98 6 9 0.00073 0.052 14.6 0.8 1 21 332 352 332 357 0.93 7 9 1.9e-05 0.0014 19.6 0.8 1 23 362 385 362 385 0.98 8 9 0.16 11 7.2 1.3 5 23 394 412 391 412 0.95 9 9 0.0005 0.036 15.1 3.3 1 21 420 440 420 441 0.94
Sequence Information
- Coding Sequence
- atgGACATCCAAGACTGTCTGATCTGCCACATGTGTCACGGATTATTGAGAAAAATTGATCACTTTGCACAGCAGATAAGCAGGAgcttaaatgttataaatgaaaaGGTCTCACAAAATCACATTCCGTACTACCAAACTACACAAGTTAAATTGCTCTCAGTAGATCCTGAAGAAGATGGGTTATCCCAGGAAGGCTCTGGAGGTAAAGAGTACCAGGAAATAGGCGTACGGGATGACTTGGATATGGAACAATTTGAGCCGAGGAATGATGTGGATGGGTCAGAGATGGATGGTCTAcagAATTATAACGATCATACTAAAAATGATAATGAAAGTGATGTGAAAAATAAAAGcgaggaaaagaaaaaaaagaagggTAAAAAGTTAAAAAGCGGGTTTAAGAAGATAATATTGTCCTTGGAAGAACAGAAAGCGGAGTTAGAAGCTAAAAGAAAGACGAAGAAATATCTAGATGCTGagtttaaatgttataattgtGCTTTAGGATTCTTGTTTAAAGATACTTATCAGGCACACATGATGAGGCATGAAGAGTCTAACGGTGAGTACAAGTGTCCGACATGCACGCTCCGTTTCGCGTCCCCCGCCGTGTTACGTGCGCATGCGCAGCTGCACGGCGTGCGCGTGCGCTGCCGCCGCtgccacgcgcacgcgcacgcccGCCAGGCGCGCTCGCACGCCGCGCGCTGCCACGCACGCGCCACCACGCCGTGCCATCTGTGCGCTAGGGTGTTCAAAGACGCTAGCGGTCTTCAACAGCACATCAAAAGATTCCACCAGTCTAAGAACAGTCTTCGGAGCTATTCCTGCAGTGTTTGTGGGAAGAGTTACAACAATCAAGCCGCTGTGAGGACGCATATGATCAAGCACTTAAACAGAAAGTTCACGTGCGACCGCTGTACAGCGACATTCAGCAGTCCCTACACGCTGAGTCAGCACAAGAAGAGACACGACTCTCAGCCGGAACAACACTACTGCGAGATATGCAAGATCTCGTACAATAGTAGGAAGAGCTTGTTGGCGCATAGGAGGAACGCGTTAGTACATCAGCAGACTGTTTACGAGTGTCCCGTATGCTCTCGAGTATGTGCGAACCAGCGTTCCTTATCGTCGCACATGACCACCGTACACTCCACCAGCAAGGACCATGTGTGTGAGTGTGGTGCGCGGTACACCAGCCGCAAGTCGATGGTGAGACACCGTGCCAGTCACAATCCGGTGGCGAGAGAGGTGCACGCTTGTCATAGGTGTCCTAGCACTTTTAAGagTCGGAGTAAGCTGAATCGCCATTTAAGACAAGTTTGCGAAAAAGATAAGTTGGAAGAAGAATTGTCTTGTTATTACGAACAACCCAtttga
- Protein Sequence
- MDIQDCLICHMCHGLLRKIDHFAQQISRSLNVINEKVSQNHIPYYQTTQVKLLSVDPEEDGLSQEGSGGKEYQEIGVRDDLDMEQFEPRNDVDGSEMDGLQNYNDHTKNDNESDVKNKSEEKKKKKGKKLKSGFKKIILSLEEQKAELEAKRKTKKYLDAEFKCYNCALGFLFKDTYQAHMMRHEESNGEYKCPTCTLRFASPAVLRAHAQLHGVRVRCRRCHAHAHARQARSHAARCHARATTPCHLCARVFKDASGLQQHIKRFHQSKNSLRSYSCSVCGKSYNNQAAVRTHMIKHLNRKFTCDRCTATFSSPYTLSQHKKRHDSQPEQHYCEICKISYNSRKSLLAHRRNALVHQQTVYECPVCSRVCANQRSLSSHMTTVHSTSKDHVCECGARYTSRKSMVRHRASHNPVAREVHACHRCPSTFKSRSKLNRHLRQVCEKDKLEEELSCYYEQPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -