Hlin007412.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hyles lineata
Gene Symbol
-
Assembly
GCA_030180105.1
Location
JARJEE010000007.1:12292933-12301491[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00069 0.05 14.7 2.0 1 23 263 285 263 285 0.99
2 13 0.04 2.9 9.1 3.7 1 23 293 316 293 316 0.94
3 13 1.6 1.1e+02 4.1 0.2 1 23 320 343 320 343 0.90
4 13 9.9e-05 0.0071 17.3 2.1 1 23 418 440 418 440 0.99
5 13 0.00024 0.017 16.1 1.5 2 23 449 471 448 471 0.96
6 13 0.32 23 6.3 4.5 1 23 475 497 475 497 0.98
7 13 7.1e-05 0.0051 17.8 2.4 1 23 502 525 502 525 0.97
8 13 0.64 46 5.3 1.6 3 23 531 552 530 552 0.85
9 13 1.6 1.2e+02 4.1 0.2 1 12 571 582 571 592 0.75
10 13 0.1 7.2 7.9 0.1 3 23 646 667 644 667 0.93
11 13 3.3e-06 0.00024 21.9 1.2 1 23 676 698 676 698 0.98
12 13 0.00073 0.052 14.6 0.8 3 23 706 726 704 726 0.96
13 13 5.6e-06 0.0004 21.2 2.6 1 23 732 755 732 755 0.98

Sequence Information

Coding Sequence
ATGATCGTGTTAAAAGCATGTACTGTATGTTTTAGCGTTGATTCAAAACTATACAGTTTGAACACTGGCAGCGTGAGGCGTGAATACAATTTGGTGTCCGGTCTTCATACGGAGCCGGGGAGCGGCCTGCCGGAGTACCTCTGCGTGTTTTGCTTGGCTCTTGTGAGACGGTCCGTTAAGTTTCGCGAAAAATGCCAACGGGCTCACTACGCTCTGCAGGAAATACTGCACCGGGGTAAAGAgatCAATCAATCCCATTTACAATCATTCAACTGCAAGGAATTAGATATCATGCCACCATTTTCATACTTAGACCTAAAACGGACCCACTATGAAGATGCCAAGTTTCAGTGGGTTCGTCATAACAGACTCATGACTACAACAGGAGATTCAATTCCCATCGCACACTACAGTACTCTAACCGATCAGGATACATTCTGTGATGTTGCCGTAAAGAATAACATAGTCAATGCAAATGATATCAAAATAGAAACAGAGATACCATGCACATTTGATGAAAAGTTTGCTAAGGAGGAAGATTATGTAGAACAGTCTAATGAAAATGATGATGTTAACCCCACAGATGATTTtattgatgataattatgatgataataatgatgacaATGATATTGATGATAGTAATGATAATTTTATGGATGTGAGTGAGATTGATAATAAAGTGGATGGATCACAGCTCGAAGAGGAGTATGCCAGCATATACCCTATATCGGTGAAAGAGGCCAAAGCTGCATTGGAAGTTTATAAGTTATTTAGCAATGGAAAGTACAGATGTGAagtttgtaataaaagctaTCACAATGAAGGGAGACTAAATGTTCATTCCAGAATGCATGACAAAcaCACAAGTGGTAACTATCACTGCAACCTTTGTGACTATTATTATAAGACAGATTTCCTATTACAAACACATATGACAGAGAAACACATATACAAATATGTCTGCAGAAAGTGTCCAGAAGTGAGCTTCGATAGAATATCTGCCAAACAACACTACATATGGACGCATCTTCAGAAAGGTCAGAAGAAAAACGCCAACTGGTATGAATCTAGGCCGAGCTGGTTAAGTGGCAAGGGTGGTAAGAGAGTTAAAGGTGTGGTAACACTCAGGCCTGTCAGGAAACTGAACAAATTGCCTGAAGACTTTCTTATATACACCCCAATTGGCCACGAAGAACAGTATCAGATGGTGAGAGATAGGAAAAAGTCGCGGAATTACATTGATTCTGCATATAAATGTGAAATGTGCTATAGAGGATTCAGAGAGTCGGCGACGTACGAGAAACACATGAAGAAACATGACCCAgctTACGCGGGAAATGTTCAGTGTGACATGTGCAAATTGTTCTTCCGCGACTCTAGGAAGTTGTACAAGCACATGAACATCACGCATCTCTTCAAATACTCCTGCCAACTGTGTAGTTTTGTCTGCGTTAATAGAAGTCAAGCACATTCTCATTATAGGTGGCACAAAAACGTCACTTACTCATGTCCTCACTGTGATAAAGTGTTTAAGAAAGTATCAACTCGACTGACTCACATAAGAATAAAGCATCCGTCAACGAATATCTGCAATTTGTGTGGCCACAGTTTCGTCAGCGAAAACGGTTTATATTGCCACAAGCAAATCGCACATACTGCAGAAGAGCGCGAGTTGAGCGAGGCGGCTGCGGTGAACCCGGCGCACCCGTACTACTGCGGCGACTGCGGCCTGCACTTCCTCAGCGACAGAGCCTTCGCCACGCACCTCGGCAGCTCCAACAAGCACGCCTCCACCAACCTGTCAATAAAACCTAGTCGTAAATTGGAGTTGGATTCGAAGAACGAGAAGGGCGACACGAAGAAGCGCGGGAGGCCGCGCATGGGCGGCGCGCGCTCCGACATACTCAACAACGGACTCACCACCTCCACCAACTGCGAAGTGTGCGGCAAAGTGTTGGTGAACGACGTGCAGGCGCGCAAGCACTACGAGTCGGAGCACCCCGGCACCGAGTACCTCAAGCGGTACATGTGCGATGTGTGCGGACATACCACCAGGCAATATGCAAACCTAATGGTGCACATGCGCACACACACCAATGAAAAGCCGTATGGATGCCCGCATTGCGACAGGCGATTCAGCATGCCAAGCAATAGGGATAGACATCTTGTGGTGCACACAGGCGAAAAGCGCTACCAATGTCAGCACTGCAACCGTCGCTTCACACAGAGTAGTGCCGTGAAGCTGCACATACAGACGGTCCACCTGAAGATCCCGTACGCGCCGTGGGTGAAGAAGAACCGCAAGCGGCGCAAGGAGCACGAGgcgccgccccccgcgccccccgcacccccGCCCCCCCAACACAAGCTGCTGCTCGACACGCAGGGGGACTACCTCAACGCTTACATCAACTATAACGACTACTGA
Protein Sequence
MIVLKACTVCFSVDSKLYSLNTGSVRREYNLVSGLHTEPGSGLPEYLCVFCLALVRRSVKFREKCQRAHYALQEILHRGKEINQSHLQSFNCKELDIMPPFSYLDLKRTHYEDAKFQWVRHNRLMTTTGDSIPIAHYSTLTDQDTFCDVAVKNNIVNANDIKIETEIPCTFDEKFAKEEDYVEQSNENDDVNPTDDFIDDNYDDNNDDNDIDDSNDNFMDVSEIDNKVDGSQLEEEYASIYPISVKEAKAALEVYKLFSNGKYRCEVCNKSYHNEGRLNVHSRMHDKHTSGNYHCNLCDYYYKTDFLLQTHMTEKHIYKYVCRKCPEVSFDRISAKQHYIWTHLQKGQKKNANWYESRPSWLSGKGGKRVKGVVTLRPVRKLNKLPEDFLIYTPIGHEEQYQMVRDRKKSRNYIDSAYKCEMCYRGFRESATYEKHMKKHDPAYAGNVQCDMCKLFFRDSRKLYKHMNITHLFKYSCQLCSFVCVNRSQAHSHYRWHKNVTYSCPHCDKVFKKVSTRLTHIRIKHPSTNICNLCGHSFVSENGLYCHKQIAHTAEERELSEAAAVNPAHPYYCGDCGLHFLSDRAFATHLGSSNKHASTNLSIKPSRKLELDSKNEKGDTKKRGRPRMGGARSDILNNGLTTSTNCEVCGKVLVNDVQARKHYESEHPGTEYLKRYMCDVCGHTTRQYANLMVHMRTHTNEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWVKKNRKRRKEHEAPPPAPPAPPPPQHKLLLDTQGDYLNAYINYNDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00859816;
90% Identity
iTF_01430185;
80% Identity
-