Hlin018193.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000022.1:8688258-8696860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 7.2 7.9 2.6 1 23 255 277 255 277 0.98 2 11 1.1 78 4.6 5.7 1 23 284 306 284 306 0.97 3 11 4.7 3.4e+02 2.6 0.1 1 10 310 319 310 333 0.72 4 11 4.7e-05 0.0034 18.3 5.6 1 23 340 363 340 363 0.95 5 11 0.00012 0.0084 17.1 0.2 3 23 371 392 369 392 0.96 6 11 0.00015 0.011 16.7 2.9 2 23 406 427 402 427 0.95 7 11 7.4e-06 0.00053 20.9 0.6 1 22 433 454 433 458 0.94 8 11 0.0005 0.036 15.1 1.5 2 23 467 489 466 489 0.95 9 11 3.5e-06 0.00025 21.9 0.3 1 23 495 518 495 518 0.98 10 11 9.3e-06 0.00067 20.5 2.2 1 23 527 549 527 549 0.98 11 11 0.00053 0.038 15.0 0.3 1 23 555 578 555 578 0.97
Sequence Information
- Coding Sequence
- ATGGAAGCCGTGATAGAAACAATAGATATGTATTGTTTTGGTTGTTTGAGTAATAGCAGTGAATTAAATGGTTTGCATCAGTACAACTTTAAAAATGGGCCACTCCGAGCTCTTTTACAGgTGGACTGCCTTAATTTGTGTTATGTTTGCAAAAGGTTGGCTCAGAAAGCAGACAGCTTCATACAGAATGTGCAaagtaatcaaatattaatgGAAAATTTTCACAGTATGATGGATGTAACACTACAAGCAGTTAGAAGTCAAATTCATCCACTACTCAATTTGACTCAGGTCTCGTTATGTGCCATAGATTTTTTAGATAAAGGTGAAGTTAAACTGGAGAAAGTGGGCAATGATCTTGTCGGAGAATTCTTTCAGAAAGAAGATGATTCTCTAGATGTGCCAGAAGAAACtaatatggaaaatataaaaattgaaatgaaagAAGAAGGTAGGGATGCAATTGATGATGATTTCATGGATGACcataataatgatgatgttgACTTTCACAACCCATTTTACAAGGAGGATACATTCCAACTGCAAGAATTGCTCAAAGAAGAGGTCGAAGTGGAAGAAATAGATCTTATAAACCTTGAAAATAGTTTAAAGCAAGGCAAAActaagaaaaagaagaaaagtaaaatgaaactgAATGGGCCAGATATTCCCTTGATTCAAAAAGTATACTTAACAAAGAAGCAATGCTTAGAAGAGCGTGAGAGGATGGCCCAAGACTCCAAGTACATAAACTCGACGTATAAATGTGTGGATTGCATCAAGGGCTTCCATTTCAAGCCTAGCTTCGATAGACACATGGAAAAACACAGTGAGAGTATGGGAATCCATCGATGCGAAGTTTGCAAACAGTGCATGGACACAGAAGAGAAATTGACcaatcataaaaaataccatttcgtACGATACAAATGTGCCGAGTGCGGTTTGATGAGAAACGGTCGACTTACAATCAGGGATCATTACACAGCCATACACTGCCATGGATATTATCAGTATAACTGTCCACATTGCCCGAAGACATTTAAGCGTCAAGTATCCATGAGGAAGCACGTTTGTTACTCGCATAGGAATAAAGAACGAGTTATTTGTGCGTATTGCGACAAAAGCTATGCCAATAAAGATGTACTCAAAGGACATATGATGAGGAGGCATCCAAAGAAAGTGTCAGCCGGTGAGAAATGCAAGCGTTGTGTGTGTCAGGAATGCGGAATGGCGTTCGTATCACCGTCGCAATTGAGGAGTCACAGCCTCAAACATACACACAGCAGGAATTACTACTGCGTCGAGTGTGATAAAAGTTTTAAGTCGGACTCAACGCTCAAACAACATCTGAAGACTGCATTGCCCCACATCAATTACATAGATCTACCATTACCGTGTCTGCACTGTAACAAGAGATTCGCGATTAGAAGGGATCTAGAGAGGCACACAAACAGGGTCCATTTGAATCTGAGGCCGTATAAATGTGACATCTGTGATAAGTCGTACGTAACGTCGTGGGGTCTCACAGACCACAAGCGGGTCACCCATGAAGGATTCAAGCGACCCATGAAGTTCTCTTGCCCTATGTGCGACAAGGTTTTCGATcgtAACCACATACTAAAAACCCACCTTCGCACACACACTGGTGAAAGGCCGTATCAATGCAGCAAATGTCCAGCGCAGTTCAGCCAATCTGGAATACTCAACACACATATGAAGCTCATACATCTTAAACTAACCAGGGACGGCAGGCCCAAAGCGCTCGTCAAGAAATAG
- Protein Sequence
- MEAVIETIDMYCFGCLSNSSELNGLHQYNFKNGPLRALLQVDCLNLCYVCKRLAQKADSFIQNVQSNQILMENFHSMMDVTLQAVRSQIHPLLNLTQVSLCAIDFLDKGEVKLEKVGNDLVGEFFQKEDDSLDVPEETNMENIKIEMKEEGRDAIDDDFMDDHNNDDVDFHNPFYKEDTFQLQELLKEEVEVEEIDLINLENSLKQGKTKKKKKSKMKLNGPDIPLIQKVYLTKKQCLEERERMAQDSKYINSTYKCVDCIKGFHFKPSFDRHMEKHSESMGIHRCEVCKQCMDTEEKLTNHKKYHFVRYKCAECGLMRNGRLTIRDHYTAIHCHGYYQYNCPHCPKTFKRQVSMRKHVCYSHRNKERVICAYCDKSYANKDVLKGHMMRRHPKKVSAGEKCKRCVCQECGMAFVSPSQLRSHSLKHTHSRNYYCVECDKSFKSDSTLKQHLKTALPHINYIDLPLPCLHCNKRFAIRRDLERHTNRVHLNLRPYKCDICDKSYVTSWGLTDHKRVTHEGFKRPMKFSCPMCDKVFDRNHILKTHLRTHTGERPYQCSKCPAQFSQSGILNTHMKLIHLKLTRDGRPKALVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428379;
- 90% Identity
- iTF_00428379;
- 80% Identity
- -