Hlin002469.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000002.1:19329860-19332306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.092 6.6 8.0 0.5 1 23 139 161 139 161 0.92 2 10 0.01 0.74 11.0 1.5 3 23 188 208 187 208 0.97 3 10 0.0044 0.31 12.1 0.2 1 23 230 252 230 252 0.98 4 10 4e-06 0.00028 21.7 0.3 1 23 256 278 256 278 0.99 5 10 9.6e-06 0.00069 20.5 0.4 1 23 283 306 283 306 0.96 6 10 2.7e-05 0.002 19.1 0.5 2 23 313 335 313 335 0.97 7 10 8.2e-05 0.0059 17.6 0.7 1 23 342 365 342 365 0.96 8 10 0.0019 0.13 13.3 3.9 2 23 372 393 371 393 0.96 9 10 2.8e-05 0.002 19.0 3.8 1 23 399 421 399 421 0.95 10 10 4.1e-06 0.0003 21.7 0.7 1 23 424 446 424 446 0.97
Sequence Information
- Coding Sequence
- ATGACGAAAAAAGATAGTAgcCTCATCGAAGAGACAAATTCAACAATAATTGTAAAAGACGGCGACGGCAGCGATATCAAACTCACATTACTGAAAAACCCAATCGCACTCAAGGACTTGGAGTGTCATTTTGAACAAAACGATGTCAATAACTCAAGAacatataataaagataaattccaaaaaaataagagGAGAGCCAGCATGGCCTTCCTAAAAGAACCAATTGCTTTAGACAAAATCGATTGGGGTCCTGATAACAAAGCGATAACCTTTCACGTGAAGACTATCCAGGGCGCGTGCCTCCGAGAGGTCACCAGAACAAAGACAAGGTCGGACCAAAAATGGAAAGAAAACGCTTTGACTATATTTGAAAATTCTCTTGTTTACCCCTTCATACACGCGAGCAATAAATACAAGTGCTTCATTTGCTCTAAACAGTTTCTCGAAGCTGCTTTGTTGAAAGAACATTCCCTAAACCATACTATTAACGAAATGAGGGAGGAATTGAACAATCGAGTCAGAGACAAAAACATCAAAGTAGACGTAACATACGCACATTGCAAATTATGCTCAAAAACATTACCAGATTTTAATGCATTAAAAATACACCTAAGAGAACACGGGAAGAAGCTCGATCCAGATTTCCAGGATAACCTCATTCCGTTTAAACTCGGCGGCGATAATTTCGAGTGCCAAGTATGCGGAGaaacatatttgaaattaagATTACTGATAATCCACATGAGCAAGCACTTCAATAACTACAGCTGCGAGATATGCGGGTCGGTGTTCATTTCCCTCACCTTGCTCAAGCGCCATCTGCAGACGCACGAAACTGGCAACTTCCCTTGCGAGAAGTGCGACAAAGTGTTCACTAACTCGGCCAAGCGGACTCTACACATGCGCGGTGTCCATTTGAAGCAGTTTCCTCGTCGCTGCCCAATCTGCCCGGAGAGGTTCAACTCCAATTACCAGAGGACGAAGCATCTGCGCATAGTGCACAATCAAACCACAGGCTTGTTCCGCTGCGAGACTTGCGGGAGGGAGTACGACTTGAAATACCACTTGCTAGTCCACATACGGGCAGTGCACCTCCAAGAGCGGAACCAGGAGTGTCCGATATGCCATTCAAGATTCTTCTCCAAGTACTGCCTGTCTCGACACATGGTGATACACACGGGCGAGAAGAATTTCAAATGCGATGTTTGCGGGAAGGCGTATTCCAGGAGGAAGAACTTGAGGGAGCATTGTAAGTCGCACGCGGGCCACGTGTGCACCGTGTGCGGACAACACTTTAGTGATCAAGCGAGTTTGATAGCGCACGTCAATTCACATGGCGTTTTgtga
- Protein Sequence
- MTKKDSSLIEETNSTIIVKDGDGSDIKLTLLKNPIALKDLECHFEQNDVNNSRTYNKDKFQKNKRRASMAFLKEPIALDKIDWGPDNKAITFHVKTIQGACLREVTRTKTRSDQKWKENALTIFENSLVYPFIHASNKYKCFICSKQFLEAALLKEHSLNHTINEMREELNNRVRDKNIKVDVTYAHCKLCSKTLPDFNALKIHLREHGKKLDPDFQDNLIPFKLGGDNFECQVCGETYLKLRLLIIHMSKHFNNYSCEICGSVFISLTLLKRHLQTHETGNFPCEKCDKVFTNSAKRTLHMRGVHLKQFPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLVHIRAVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCDVCGKAYSRRKNLREHCKSHAGHVCTVCGQHFSDQASLIAHVNSHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820324;
- 90% Identity
- iTF_00290914;
- 80% Identity
- -