Hlin019777.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000025.1:6371882-6379039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.5e-06 0.00018 22.3 0.2 2 23 102 123 102 123 0.97 2 10 0.0031 0.22 12.6 3.8 1 23 128 150 128 150 0.97 3 10 6.6e-07 4.7e-05 24.2 3.6 1 23 156 178 156 178 0.96 4 10 9.4e-05 0.0068 17.4 1.6 1 20 184 203 184 205 0.93 5 10 0.0002 0.014 16.4 2.0 2 23 217 238 216 238 0.97 6 10 4.7e-06 0.00033 21.5 1.0 1 23 244 266 244 266 0.97 7 10 1.3e-06 9e-05 23.3 0.5 1 23 272 294 272 294 0.98 8 10 0.0023 0.17 13.0 7.1 1 23 300 322 300 322 0.98 9 10 4.8e-06 0.00034 21.4 1.0 2 23 329 350 328 350 0.97 10 10 0.0023 0.17 13.0 5.3 1 23 357 380 357 380 0.95
Sequence Information
- Coding Sequence
- ATGGATTCATTGGAAGGCGAAATAGACAACATATTTTACAACCTGCTATATCAGCATCACCAGAAATACAGcataAAGAAAGAAGATGAATACCAGAGCCAGACATCAACGGATAGTTCCCGAGACTCCACGTGGACCGAAATTAAACTGGAACCTGAAGACAACATGGTCAAGTCCGAACATACAGCACAACagtacCAAGAAGATGAACTATCTCATCTGGTGCCGGCGAGAAATCAACCCAATTCTTCGCAAGATATTGAGAATGAAACGGCGTCAACAGACGACGCGGAAAAGTCAAACTCCTGTCCCGTATGCCAAAAAACCTTCGCCAACCAAGGCAACGTGAAACGACACCTTTTGATCCACGCGCGAGTCAAACACGAGTGCGATGTTTGCTCCAAAAAGTTCCTAAAACAAGACCAATTGAACAGACACAAATCGAGGCACAACCGTGCCTCGTCTCACGACTGCCTCGAATGCGGGAAAAGGTTCAAAACACCATCGAAATTGAAACAGCACACTCGTACTCATATAAAGGAAAAGTCATATTTTTGCGAGCATTGTCATAAGGCTTTCTCAACTGAGGCAACTCTGGCCAAGCACAAAGCCAGGAGCAGATGCAAAAAGCCTCTAAGCCTACCCCTCTCCTGCACGGTCTGTTTTAAGACTTTCGAAAAGGAATTTCTACTCAAAAGCCATCTCAGGCGGCATGAGACCGACCGGCCTTATGCTTGCGACTTATGCGGCATGAGTTTTAAGCACAAGAGTACAATAGTCCGTCATATAAGATGGCATAATGGGATTAAACCCTTTTCGTGTAAAGTCTGCAACAAGTCTTTCacgcaagccgggcttttgaaGCCTCACATGAGAGTACATACTGGGGAGAGGCCCTATCAATGTCATTTGTGTATGAAAACATTTTCCTACAAGCACAATATGTTGAGACACGTGTCGAGGCATACCAAGGTGAAAAGGTTGGTATGTGAGATATGTCACAAAAAATTTCCGAGAGAGAGCAGGTTGATCTATCATATGCGTATACATTTAGACGAGAAGAATTTTTTCTCTTGTTTCGTCTGTCCGAAGAAGTTTTCGCATCGGCAGAATGTTTTGCGACATTATTTCAGGAAGCATCCGGGACATACTTACGATTGTCCCGATACGGACGCAAAAGTGGCTTTGAGGGTGTGGGATAAGGTTAAGAGTACTTTTTTGAGGGAACCAGAGGAGATTTTGGGGTAA
- Protein Sequence
- MDSLEGEIDNIFYNLLYQHHQKYSIKKEDEYQSQTSTDSSRDSTWTEIKLEPEDNMVKSEHTAQQYQEDELSHLVPARNQPNSSQDIENETASTDDAEKSNSCPVCQKTFANQGNVKRHLLIHARVKHECDVCSKKFLKQDQLNRHKSRHNRASSHDCLECGKRFKTPSKLKQHTRTHIKEKSYFCEHCHKAFSTEATLAKHKARSRCKKPLSLPLSCTVCFKTFEKEFLLKSHLRRHETDRPYACDLCGMSFKHKSTIVRHIRWHNGIKPFSCKVCNKSFTQAGLLKPHMRVHTGERPYQCHLCMKTFSYKHNMLRHVSRHTKVKRLVCEICHKKFPRESRLIYHMRIHLDEKNFFSCFVCPKKFSHRQNVLRHYFRKHPGHTYDCPDTDAKVALRVWDKVKSTFLREPEEILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430128;
- 90% Identity
- -
- 80% Identity
- -